Transcription Factor Binding Site Information

Escherichia coli - NC_000913.2
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CTGACCAATCGGTCAC + [1272884, 1272899] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ychN chaC ychO narL narX
Gene Locus tag Description
ychN b1219 conserved protein
chaC b1218 cation transport regulator
ychO b1220 predicted invasin
narL b1221 DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)
narX b1222 sensory histidine kinase in two-component regulatory system with NarL