Transcription Factor Binding Site Information

Escherichia coli - NC_000913.2
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGGACCAAACAGTCTG + [2718340, 2718355] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... yfiQ yfiP pssA yfiM kgtP
Gene Locus tag Description
yfiQ b2584 inhibiting acetyltransferase for acetyl-CoA synthetase
yfiP b2583 conserved protein, DTW domain
pssA b2585 phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
yfiM b2586 required for high salt suppression of motility; probable lipoprotein
kgtP b2587 alpha-ketoglutarate transporter