Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00002180
Genome
Escherichia coli - NC_000913.2
TF
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGGACTAAACGGTCAA + [1073343, 1073358] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rutA rutB rutC rutD rutE rutF rutG rutR putA
Gene Locus tag Description
rutA b1012 pyrimidine oxygenase, FMN-dependent
rutB b1011 ureidoacrylate amidohydrolase
rutC b1010 putative aminoacrylate peracid reductase
rutD b1009 putative aminoacrylate hydrolase
rutE b1008 malonic semialdehyde reductase
rutF b1007 flavin:NADH reductase
rutG b1006 pyrimidine permease
rutR b1013 DNA-binding transcriptional repressor for rut operon
putA b1014 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase