Transcription Factor Binding Site Information

Escherichia coli - NC_000913.2
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGACCAGCCATTCCA + [2371544, 2371559] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... pmrD arnF arnE arnT arnD arnA arnC arnB menE menC menB menH menD
Gene Locus tag Description
pmrD b2259 inactive two-component system connector protein
arnF b2258 undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit
arnE b4544 undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit
arnT b2257 4-amino-4-deoxy-L-arabinose transferase
arnD b2256 Undecaprenyl phosphate-alpha-L-ara4FN deformylase
arnA b2255 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase
arnC b2254 undecaprenyl phosphate-L-Ara4FN transferase
arnB b2253 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent
menE b2260 o-succinylbenzoate-CoA ligase
menC b2261 o-succinylbenzoyl-CoA synthase
menB b2262 dihydroxynaphthoic acid synthetase
menH b2263 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
menD b2264 bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase