Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000021d0
Genome
Escherichia coli - NC_000913.2
TF
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGACCATTTGGTCCA + [29359, 29374] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... dapB carA carB
Gene Locus tag Description
dapB b0031 dihydrodipicolinate reductase
carA b0032 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase
carB b0033 carbamoyl-phosphate synthase large subunit