Transcription Factor Binding Site Information

Escherichia coli - NC_000913.2
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGACTACCTGGTCAA + [3211865, 3211880] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rpoD dnaG mug
Gene Locus tag Description
rpoD b3067 RNA polymerase, sigma 70 (sigma D) factor
dnaG b3066 DNA primase
mug b3068 G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase