Transcription Factor Binding Site Information

Escherichia coli - NC_000913.2
RutR [UniProtKB:P0ACU2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGACTGGCTGGTCAG + [3994560, 3994575] 18515344 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 102

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... xerC yigA dapF yifL yigB
Gene Locus tag Description
xerC b3811 site-specific tyrosine recombinase
yigA b3810 conserved protein, DUF484 family
dapF b3809 diaminopimelate epimerase
yifL b4558 predicted lipoprotein
yigB b3812 FMN phosphatase