Transcription Factor Binding Site Information

Acidithiobacillus ferrooxidans - NC_011761.1
Fur [UniProtKB:B7J425, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATATATGTAATTATTCTT + [634181, 634198] 17355989 Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details FURTA (ECO:0005633) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details PSSM site search (ECO:0005659) - 248

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... AFE_0706 AFE_0705 AFE_0704 AFE_0703 AFE_0707 AFE_0708 AFE_0709 AFE_0710 AFE_0711 hypF hypC-1 gmhA hypD-1 hypE hypA-1
Gene Locus tag Description
AFE_0706 AFE_0706 hypothetical protein
AFE_0705 AFE_0705 hydrogenase maturation protease
AFE_0704 AFE_0704 hypothetical protein
AFE_0703 AFE_0703 hypothetical protein
AFE_0707 AFE_0707 hypothetical protein
AFE_0708 AFE_0708 hypothetical protein
AFE_0709 AFE_0709 hypothetical protein
AFE_0710 AFE_0710 iron-sulfur cluster-binding protein, Rieske family
AFE_0711 AFE_0711 NHL repeat protein
hypF AFE_0712 [NiFe] hydrogenase maturation protein HypF
hypC-1 AFE_0713 hydrogenase assembly chaperone HypC
gmhA AFE_0714 phosphoheptose isomerase
hypD-1 AFE_0715 hydrogenase expression/formation protein HypD
hypE AFE_0716 hydrogenase expression/formation protein HypE
hypA-1 AFE_0717 hydrogenase nickel incorporation protein HypA