Transcription Factor Binding Site Information

Pseudomonas syringae group genomosp. 3 - NC_004578.1
Fur [UniProtKB:Q87WN7, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGATATTCATTATCAA + [5023792, 5023808] 21784947 Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - 373

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PSPTO_4462 fumC-2 PSPTO_4460 sodA PSPTO_4458 ptsH PSPTO_4456 ptsN yfiA rpoN pmbA PSPTO_4464 tldD PSPTO_4466 PSPTO_4467
Gene Locus tag Description
PSPTO_4462 PSPTO_4462 hypothetical protein
fumC-2 PSPTO_4461 class II fumarate hydratase
PSPTO_4460 PSPTO_4460 hypothetical protein
sodA PSPTO_4459 superoxide dismutase
PSPTO_4458 PSPTO_4458 hypothetical protein
ptsH PSPTO_4457 phosphocarrier protein HPr
PSPTO_4456 PSPTO_4456 hypothetical protein
ptsN PSPTO_4455 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
yfiA PSPTO_4454 ribosomal subunit interface protein
rpoN PSPTO_4453 RNA polymerase sigma-54 factor
pmbA PSPTO_4463 pmbA protein
PSPTO_4464 PSPTO_4464 hypothetical protein
tldD PSPTO_4465 tldD protein
PSPTO_4466 PSPTO_4466 hydrolase
PSPTO_4467 PSPTO_4467 hypothetical protein