Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00006480
Genome
Pseudomonas syringae group genomosp. 3 - NC_004578.1
TF
Fur [UniProtKB:Q87WN7, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGATGACGATTCGCAG + [204797, 204813] 21784947 Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - 373

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PSPTO_0181 trkA sun fmt def-1 PSPTO_0176 PSPTO_0175 PSPTO_0174 qor PSPTO_0172 PSPTO_0182 tag glyQ glyS PSPTO_0186 PSPTO_0187
Gene Locus tag Description
PSPTO_0181 PSPTO_0181 molybdopterin oxidoreductase subunit alpha
trkA PSPTO_0180 Trk system potassium uptake protein TrkA
sun PSPTO_0179 sun protein
fmt PSPTO_0178 methionyl-tRNA formyltransferase
def-1 PSPTO_0177 polypeptide deformylase
PSPTO_0176 PSPTO_0176 LysM domain-containing protein
PSPTO_0175 PSPTO_0175 DNA processing protein DprA
PSPTO_0174 PSPTO_0174 SUA5/yciO/yrdC family domain protein
qor PSPTO_0173 quinone oxidoreductase
PSPTO_0172 PSPTO_0172 hypothetical protein
PSPTO_0182 PSPTO_0182 lipid A biosynthesis lauroyl acyltransferase
tag PSPTO_0183 DNA-3-methyladenine glycosidase I
glyQ PSPTO_0184 glycyl-tRNA synthetase subunit alpha
glyS PSPTO_0185 glycyl-tRNA synthetase subunit beta
PSPTO_0186 PSPTO_0186 D,D-heptose 1,7-bisphosphate phosphatase
PSPTO_0187 PSPTO_0187 hdtS protein