Transcription Factor Binding Site Information

Pseudomonas syringae group genomosp. 3 - NC_004578.1
Fur [UniProtKB:Q87WN7, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GCGCAAATGCTTCGCAA + [121243, 121259] 21784947 Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) - 374

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PSPTO_0093 PSPTO_0092 PSPTO_0102 PSPTO_0094 PSPTO_0095 PSPTO_0096 PSPTO_0097 PSPTO_0098 PSPTO_0099 lrp dadA PSPTO_0110 PSPTO_0109 PSPTO_0108 PSPTO_0107 cycB PSPTO_0105 PSPTO_0104 dadX
Gene Locus tag Description
PSPTO_0093 PSPTO_0093 hypothetical protein
PSPTO_0092 PSPTO_0092 aldehyde dehydrogenase family protein
PSPTO_0102 PSPTO_0102 endoribonuclease L-PSP family protein
PSPTO_0094 PSPTO_0094 membrane protein
PSPTO_0095 PSPTO_0095 phospholipase D
PSPTO_0096 PSPTO_0096 GntR family transcriptional regulator/aminotransferase, class I
PSPTO_0097 PSPTO_0097 hypothetical protein
PSPTO_0098 PSPTO_0098 hypothetical protein
PSPTO_0099 PSPTO_0099 hypothetical protein
lrp PSPTO_0100 leucine-responsive regulatory protein
dadA PSPTO_0101 D-amino acid dehydrogenase small subunit
PSPTO_0110 PSPTO_0110 metallo-beta-lactamase superfamily protein
PSPTO_0109 PSPTO_0109 hypothetical protein
PSPTO_0108 PSPTO_0108 membrane protein
PSPTO_0107 PSPTO_0107 hypothetical protein
cycB PSPTO_0106 cytochrome c5
PSPTO_0105 PSPTO_0105 DNA-binding protein
PSPTO_0104 PSPTO_0104 hypothetical protein
dadX PSPTO_0103 alanine racemase