Transcription Factor Binding Site Information

Pseudomonas syringae group genomosp. 3 - NC_004578.1
Fur [UniProtKB:Q87WN7, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGAGATTGCTTATCAG + [2557840, 2557856] 21784947 Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) - 374

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... dacB PSPTO_2313 PSPTO_2312 PSPTO_2311 lsc-2 nasT PSPTO_2307 PSPTO_2308 pyrD rmf
Gene Locus tag Description
dacB PSPTO_2314 D-alanyl-D-alanine carboxypeptidase
PSPTO_2313 PSPTO_2313 sensory box/GGDEF domain protein
PSPTO_2312 PSPTO_2312 CHASE domain/PAS domain protein
PSPTO_2311 PSPTO_2311 23S rRNA m(2)G2445 methyltransferase
lsc-2 PSPTO_2305 levansucrase
nasT PSPTO_2306 response regulator NasT
PSPTO_2307 PSPTO_2307 hypothetical protein
PSPTO_2308 PSPTO_2308 hypothetical protein
pyrD PSPTO_2309 dihydroorotate dehydrogenase
rmf PSPTO_2310 ribosome modulation factor-related protein