Site information for: LexA in species Burkholderia thailandensis; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00007ff0
Genome: Burkholderia thailandensis - NC_007651.1
TF: LexA [UniProtKB:Q2SVP7, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CTGTTTTTTTATACAG	+ [740771, 740786]	23872555	Experimental technique details Consensus search (ECO:0005624) Consensus search - ECO:0005624 This is a weak form of in-silico search, in which the consensus sequence for the motif is compared to genomic positions and the number of mismatches (between candidate site and consensus) is used as a measure of site-quality. - Experimental technique details RNA-Seq (ECO:0005664) RNA-Seq - ECO:0005664 In RNA-seq, RNA is extracted from the cell at a given time and reverse transcribed to obtain cDNA. This cDNA is then sequenced. This provides a snapshot of the "transcriptome" of an organism at a given time. -	403

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
recA	BTH_I0643	recombinase A
recX	BTH_I0644	recombination regulator RecX
BTH_I0642	BTH_I0642	DNA-binding response regulator
BTH_I0641	BTH_I0641	sensor histidine kinase