Transcription Factor Binding Site Information

Pseudomonas aeruginosa - NC_002516.2
Fur [UniProtKB:Q03456, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GAAGATGGTAATTAATTGC + [1053333, 1053351] 8633080 Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) - 411

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... pmpR ruvB ruvA ruvC aspS PA0968 tolQ tolR tolA tolB oprL PA0974 PA0975 PA0976 PA0976.1 PA0977
Gene Locus tag Description
pmpR PA0964 hypothetical protein
ruvB PA0967 Holliday junction DNA helicase RuvB
ruvA PA0966 Holliday junction DNA helicase RuvA
ruvC PA0965 Holliday junction resolvase
aspS PA0963 aspartyl-tRNA synthetase
PA0968 PA0968 hypothetical protein
tolQ PA0969 TolQ protein
tolR PA0970 TolR protein
tolA PA0971 TolA protein
tolB PA0972 translocation protein TolB
oprL PA0973 peptidoglycan associated lipoprotein OprL precursor
PA0974 PA0974 hypothetical protein
PA0975 PA0975 radical activating enzyme
PA0976 PA0976 hypothetical protein
PA0976.1 PA0976.1 tRNA
PA0977 PA0977 hypothetical protein