Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00008930
Genome
Pseudomonas aeruginosa - NC_002516.2
TF
LasR [UniProtKB:P25084, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CACCCTGTTCGTATCT - [2088303, 2088318] 19682264 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - 421

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PA1914 PA1913 femI femR PA1915 PA1916 PA1917 PA1918
Gene Locus tag Description
PA1914 PA1914 hypothetical protein
PA1913 PA1913 hypothetical protein
femI PA1912 ECF sigma factor, FemI
femR PA1911 sigma factor regulator, FemR
PA1915 PA1915 hypothetical protein
PA1916 PA1916 amino acid permease
PA1917 PA1917 hypothetical protein
PA1918 PA1918 hypothetical protein