Site information for: LasR in species Pseudomonas aeruginosa; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00008ab0
Genome: Pseudomonas aeruginosa - NC_002516.2
TF: LasR [UniProtKB:P25084, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CTATCAATTGTATTAG	- [2545014, 2545029]	19682264	Experimental technique details ChIP-PCR (ECO:0005620) ChIP-PCR - ECO:0005620 ChIP-chip (and to a lesser degree ChIP-Seq) results are often validated with ChIP-PCR, in which a PCR with specific primers is performed on the pulled-down DNA. As in the case of RNASeq, there are many variations of these main techniques. -	423

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
ambB	PA2305	protein AmbB
ambC	PA2304	protein AmbC
ambD	PA2303	protein AmbD
ambE	PA2302	protein AmbE
PA2301	PA2301	hypothetical protein
ambA	PA2306	protein AmbA
PA2307	PA2307	ABC transporter permease
PA2308	PA2308	ABC transporter ATP-binding protein
PA2309	PA2309	hypothetical protein
PA2310	PA2310	hypothetical protein