Site information for: LasR in species Pseudomonas aeruginosa; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00008af0
Genome: Pseudomonas aeruginosa - NC_002516.2
TF: LasR [UniProtKB:P25084, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CAATCAGAAATGTCCC	+ [5836796, 5836811]	19682264	Experimental technique details ChIP-PCR (ECO:0005620) ChIP-PCR - ECO:0005620 ChIP-chip (and to a lesser degree ChIP-Seq) results are often validated with ChIP-PCR, in which a PCR with specific primers is performed on the pulled-down DNA. As in the case of RNASeq, there are many variations of these main techniques. -	423

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
PA5184	PA5184	chorismate mutase
PA5183	PA5183	hypothetical protein
PA5182	PA5182	hypothetical protein
PA5181.1	PA5181.1	ncRNA
PA5181	PA5181	oxidoreductase
PA5180	PA5180	hypothetical protein
PA5179	PA5179	transcriptional regulator
PA5185	PA5185	hypothetical protein
PA5186	PA5186	iron-containing alcohol dehydrogenase
PA5187	PA5187	acyl-CoA dehydrogenase
PA5188	PA5188	3-hydroxyacyl-CoA dehydrogenase
PA5189	PA5189	transcriptional regulator
PA5190	PA5190	nitroreductase