Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTGAACAGAATGTTA + [265600, 265614] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ccmF ccmI ccmG ccmH SO_0269
Gene Locus tag Description
ccmF SO_0266 cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF
ccmI SO_0265 apo-cytochrome c chaperone CcmI
ccmG SO_0267 cytochrome c maturation system membrane anchored thioredoxin CcmG
ccmH SO_0268 cytochrome c synthetase subunit CcmH
SO_0269 SO_0269 cytochrome c-type biogenesis thioredoxin