Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002c870
Genome
Shewanella oneidensis - NC_004347.2
TF
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAATAAAATGTTT - [1487966, 1487980] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... dmsE dmsF dmsA dmsB dmsG dmsH
Gene Locus tag Description
dmsE SO_1427 periplasmic decaheme cytochrome c DmsE
dmsF SO_1428 extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF
dmsA SO_1429 extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA
dmsB SO_1430 extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB
dmsG SO_1431 extracellular dimethyl sulfoxide/manganese oxide reductase chaperone DmsG
dmsH SO_1432 extracellular dimethyl sulfoxide/manganese oxide reductase accessory protein DmsH