Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTACTTTATTGTTA - [1703647, 1703661] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ptsG SO_1621 yqcA purU
Gene Locus tag Description
ptsG SO_1623 phosphotransferase system (PTS) glucose-specific IIBC component PtsG
SO_1621 SO_1621 hypothetical protein
yqcA SO_1622 tRNA pseudouridine synthase C-associated flavoprotein YqcA
purU SO_1624 formyltetrahydrofolate deformylase PurU