Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAATAAAATGTTT + [1897729, 1897743] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... pspF sapA sapB sapC sapD sapF fabV pspA pspB pspC ycjX ycjF
Gene Locus tag Description
pspF SO_1806 Sigma 54-dependent transcriptional activator of phage shock response PspF
sapA SO_1805 ABC-type peptide uptake system substrate-binding component SapA
sapB SO_1804 ABC-type peptide uptake system permease component 1 SapB
sapC SO_1803 ABC-type peptide uptake system permease component 2 SapC
sapD SO_1802 ABC-type peptide uptake system ATPase component 1 SapD
sapF SO_1801 ABC-type peptide uptake system ATPase component 2 SapF
fabV SO_1800 enoyl acyl-carrier-protein reductase FabV
pspA SO_1807 PspF antagonist PspA
pspB SO_1808 phage shock protein B PspB
pspC SO_1809 phage shock protein C PspC
ycjX SO_1810 protein of unknown function DUF463 YcjX
ycjF SO_1811 inner membrane protein of unknown function DUF697 YcjF