Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAATTTGATGTTA + [1912474, 1912488] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... SO_1821 polB dinG SO_1818 SO_1817 SO_1816 SO_1815 comFB
Gene Locus tag Description
SO_1821 SO_1821 outer membrane porin
polB SO_1820 DNA polymerase II PolB
dinG SO_1819 ATP-dependent helicase DinG
SO_1818 SO_1818 4-toluene sulfonate uptake permease family protein
SO_1817 SO_1817 primosomal replication protein N'-like protein
SO_1816 SO_1816 periplasmic protein of unknown function DUF2057
SO_1815 SO_1815 histone deacetylase superfamily protein
comFB SO_1814 late competence development protein ComFB