Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002c8c0
Genome
Shewanella oneidensis - NC_004347.2
TF
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAAGTAATTGTAA - [2047013, 2047027] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... SO_1944 SO_1942
Gene Locus tag Description
SO_1944 SO_1944 2OG-Fe(II) oxygenase family protein
SO_1942 SO_1942 cyclic di-GMP hydrolase