Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAATTAAATGTCA - [2198142, 2198156] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... hyaA hyaB hyaC hyaD hyaE hypF SO_2100 SO_2101 SO_2102
Gene Locus tag Description
hyaA SO_2099 periplasmic [Ni-Fe] hydrogenase small subunit HyaA
hyaB SO_2098 periplasmic [Ni-Fe] hydrogenase large subunit HyaB
hyaC SO_2097 periplasmic [Ni-Fe] hydrogenase cytochrome b subunit HyaC
hyaD SO_2096 NiFe hydrogenase maturation protease HyaD
hyaE SO_2095 NiFe hydrogenase assembly chaperone HyaE
hypF SO_2094 NiFe hydrogenase maturation protein HypF
SO_2100 SO_2100 thioredoxin family protein
SO_2101 SO_2101 predicted lipoprotein
SO_2102 SO_2102 putative outer membrane protein of unknown function DUF3570