Transcription Factor Binding Site Information

Shewanella oneidensis - NC_004347.2
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAACTCAATGTTA + [3659764, 3659778] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... nagK nagB nagA nagX
Gene Locus tag Description
nagK SO_3507 N-acetylglucosamine kinase NagK
nagB SO_3506 glucosamine-6-phosphate deaminase NagB
nagA SO_3505 N-acetylglucosamine-6-phosphate deacetylase NagA
nagX SO_3504 N-acetylglucosamine locus membrane protein of unknown function DUF1624 NagX