Curation Information

Publication
Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum.;Abella M, Erill I, Jara M, Mazón G, Campoy S, Barbé J;Molecular microbiology 2004 Oct; 54(1):212-22 [15458417]
TF
LexA [Q8UFK2, view regulon]
Reported TF sp.
Agrobacterium fabrum str. C58
Reported site sp.
Agrobacterium fabrum str. C58
Created by
Erill Lab
Curation notes
-

Experimental Process

EMSA to validate binding. RT-PCR shows mitC induction.

Transcription Factor Binding Sites


CTGTTCTTGTTTTGTTCCT
CTGTTCTTGTTTTGTTCCT

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
CTGTTCTTGTTTTGTTCCT Atu3230, Atu3229, dnaE,
... ... Atu3230 Atu3229 dnaE Atu3227 Atu8184 Atu3232
Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - repressor dimer