Curation Information

Publication
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin.;Cirz RT, Jones MB, Gingles NA, Minogue TD, Jarrahi B, Peterson SN, Romesberg FE;Journal of bacteriology 2007 Jan; 189(2):531-9 [17085555]
TF
LexA [Q9L4P1, view regulon]
Reported TF sp.
Staphylococcus aureus subsp. aureus COL
Reported site sp.
Staphylococcus aureus subsp. aureus COL
Created by
Erill Lab
Curation notes
-
External databases
NCBI GEO (GSE6258) http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6258.

Experimental Process

DNA array in response to ciprofloxacin and in non-cleavable lexA mutant. In silico 1-mismatch consensus search on genes induced only in w.t.

Transcription Factor Binding Sites


CGAACGCATGTTCT
CGAACAAACGTTTG
CGAACAAATATTCG
CGAACAAATGTTTG
CGAACAAATGTTCT
CGAACGTACGTTTG
CGAACATGTGTTCT
CGAACATATGTTCT
CGAACATATTTTCG
CGAACATATGTTCT
CGAACAAACGTTTG
CGAACAAATATTCG
CGAACAAATGTTTG
CGAACAAATGTTCT
CGAACGTACGTTTG
CGAACATGTGTTCT
CGAACATATGTTCT
GAAACATATTTTCG

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
CGAACATATGTTCT SACOL0436,
... ... SACOL0436 rpsF ssb2
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACAAACGTTTG uvrB, uvrA,
... ... uvrB uvrA SACOL0822 SACOL0821
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACAAATATTCG recA,
... ... recA SACOL1303
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACAAATGTTTG lexA,
... ... lexA SACOL1375
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACAAATGTTCT sbcD, sbcC,
... ... sbcD sbcC SACOL1380
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACGTACGTTTG parE, parC,
... ... parE parC SACOL1388
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACATGTGTTCT SACOL1986,
... ... SACOL1986 SACOL1985
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
CGAACATATGTTCT SACOL1999,
... ... SACOL1999 SACOL2000
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer
GAAACATATTTTCG SACOL2162, SACOL2161, SACOL2160,
... ... SACOL2162 SACOL2161 SACOL2160 SACOL2163
Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - repressor dimer