Curation Information

Publication
Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi.;van Kessel JC, Ulrich LE, Zhulin IB, Bassler BL;mBio 2013 Jul 9; 4(4):1 [23839217]
TF
LuxR [A7MXJ7, view regulon]
Reported TF sp.
Vibrio campbellii ATCC BAA-1116
Reported site sp.
Vibrio campbellii ATCC BAA-1116
Created by
Elliot White
Curation notes
-

Experimental Process

Authors used ChIP-seq to identify LuxR binding sites, and then cross-referenced that with a DNA-array that assayed LuxR regulation. Sites, though not reported in the paper, were derived from a PSSM matrix supplied by the author.

ChIP assay conditions
To identify the HCD genes controlled by LuxR, the authors compared the profile of a ΔluxO ΔaphA strain to that of a ΔluxO ΔaphA ΔluxR strain
ChIP notes
Plasmids expressing either FLAG-luxR (pAP116) or FLAG-luxR R17C (pST012; a DNA binding-defective luxR mutant) and empty vector controls (pSLS3 or pJV139) were conjugated into a V. harveyi ΔluxR strain (KM669). The ChIP protocol is based on previously published methods (44) and the Affymetrix ChIP assay protocol with several modifications. Overnight cultures were diluted 1:50,000 and grown for 16 h at 30°C. Fifty OD600 units of cells were cross-linked and washed as previously described (44), and cells were lysed in 1 ml of lysis buffer (1× protease inhibitors [Sigma], 50 µg ml−1 lysozyme, 1× Bugbuster, 1% Triton X-100, and 1 mM phenylmethylsulfonyl fluoride [PMSF]) for 20 min at room temperature on a rotator. Following lysis, the DNA was sheared by sonication to an average size of 100 to 1,000 bp. The supernatant was clarified at 13,000 rpm for 10 min at 4°C. Immunoprecipitation reaction mixtures contained a 200-µl aliquot of input sample, 800 µl of IP buffer (50 mM HEPES-KOH, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, and 1 mM PMSF), and 40 µl EZ-view anti-FLAG agarose beads (Sigma) (equilibrated in Tris-buffered saline [TBS]) and were carried out for 2 h at room temperature on a rotator. Following immunoprecipitation, beads were collected and washed (Affymetrix ChIP assay protocol). Immunoprecipitated complexes were eluted, and cross-links were reversed as described elsewhere (Affymetrix ChIP assay protocol). Samples (input DNA and IP DNA) were analyzed by qRT-PCR to assess the quality of the immunoprecipitation from four independent experiments. DNA from representative ChIP samples was prepared for sequencing using the Illumina ChIP-seq sample prep kit and verified by qRT-PCR. The following ChIP samples were sequenced: the input DNA and IP DNA from FLAG-luxR (pAP116), IP DNA from FLAG-luxR R17C (pST012), and input DNA and IP DNA from an empty vector control (pJV139). See the supplemental material for a description of ChIP-seq data analysis procedures.

Transcription Factor Binding Sites


TATTGACGACTTTCTCAAC
TTCTGATTTTTTTAGTATT
TATTGAGTATTTTATTAGT
AACTAATAAAATACTCAAT
TATTGTTCAATTGATTAAT
TATTAATCAATTGAACAAT
TATTGATATTTATATCCTT
AATTGATGTATTTGGTTTT
TGGTGATAATTTGCACAGT
AATTGATAAAACTCTTAGA
TATTGATTGTGAACTCAAT
TATTAATCATTGTGTCATT
AATTGTTGCCTCTATCATT
TTTTGATGAGATTATCGAT
TATTGTGATTTTTATAATT
AAGTGACTAAAAAGTCATT
TAATGACTTTTTAGTCACT
TATTGATTTCAATGTCAGG
TAATGACATTTTTATTCAT
TATTGATGGTTATGACTCT
TATTGATTGTATAATCGCC
TATTGATGCATGTGACAAC
TACTGTCAGTTAGCTCAAT
TATTGATAATTCACACCAT
TACTGATGTTTTTATTAAA
AATTGATTCTTTTGTCAGC
TTTTGATTCCTTACTCATT
TACTGATAAATTAGATATT
TATTGACGATTACCTCAGT
TATTGATACTTTTCTCTTG
TATTGATAGAAATGGCTAT
TTGTGACAAGTTAGATATT
TTATGTTTGTTTTATTAAT
TAATGATATTTTAGTCAAA
TTTTGACTAAAATATCATT
TTTTGATAAAAATATATAT
AATTGATTGAATACTCTTT
TTCTGTTATTTTTGTCAAA
TTTTGATTCCTTTCTTATT
TATTGAGAAGAGTCTCAAT
AATTGAGACTCTTCTCAAT
AAGTGATATTTTTCGCAAT
TATCGATTTTGATGTCATC
TATTGATTACACAATCAAC
TATTGATGGTCCTGTCTGT
TAATAATAAGTTTGATAAT
TAATGATATAATTGACGTT
TATTGACTTGTAACTTAAT
TATTGACAGATTTGAAAGT
TTCTGACAAATTTAAAATC
TATTGATAATTCTCTTACC
TATTGATATTTATGACAGA
AATTGATTGTCATGTCACT
TAGTGACATGACAATCAAT
TGTTGTTTACTTTATCGGT
AATTGATACATGCGTCAGT
TATTGATATAACTAACATT
TATTCATAATTCTATTTGT
TATAGACTATATTGAAAGT
TATTGATGAGTTTGTTTTT
TGTTGATAAGTAAATTACT
TATTGCTTCATCTCTCATT
TATTGATAGTTAAGTTACT
AATAGATAACATTAAAAGT
TATTAACATTTTTATAAAG
TCTTTATAAAAATGTTAAT
TATTTATATTTTTATAGTT
TAGTAAGATTTTTATTGGT
TATTGCGATTTTTGATACC
TGTTGATAGGATAATCAGT
TATTGATATAACGATAATT
TATAAAGTTTTTTGTTATT
TACTGTGATCATTCTCAAT
AATTGAGAATGATCACAGT
ATTTGATAATTTTAATAAT
AGTTGTTAAAATAGTCATT
TAATGACTATTTTAACAAC
TATTGATTTCATAATTATG
AATTGAGTTTGTTGTTAAT
TATTTACAGTTTTGTATTT
TATTAATAAAATTATTAGT
AACTAATAATTTTATTAAT
TGTCGATTGTATTATTAGT
TTTTGATATATTTAAAAGC
TATTGTTGTTTTTCATAAT
TATAGATTTTACAGTTACT
AACTAATTCATTTATTATT
TGTTGATACCGTTATCATC
AATAGATATTTTTAACGGC
TATAAATAATTCTATAAAT
TAGTATCAATTTAATCAAT
TATTGATTAAATTGATACT
TATTATCAATTATCTTTGT
AATTGATAATATCGTTAAT
TACTGATACATGACTCAGC
TGCTGACCTATTTCTCATT
TACAGTTAGAATTGTTACT
TATTGTGGATATAATCATT
TAGTAACATGTATGTCAAT
AATTGACATACATGTTACT
TAATTTTAGTTTTGTCACT
AAGTGACAAAACTAAAATT
TTTTGATAGTTTTAACAAT
AATTGTTAAAACTATCAAA
AATCGATAATTAGCTCAAC
TATTGTTATCTGTATCATA
TATTGATGCCTTTATTAAT
TATTAACTTCTTTGTTATT
TCCTGATTTAATTATCAAT
AATTGATAATTAAATCAGG
TATTAACAAGTTTATAAAA
TATTGAGCACTTTGTAATT
TATTGATATTTACATTACT
TATTGCTAAAGTTGTCATT
TAATGACAACTTTAGCAAT
TAGAGTTATTATTCTTATT
TATTATTCTTATTGATAAT
TATTGATAATTATGACTAG
TACTGTGTATTTAGACAGT
TATCGATAGAACTAACAGT
AACTGTTAGTTCTATCGAT
CTTTGATATTTCAGTCAGT
AATTATTAAATCAATCAAT
AATTGATTGATTTAATAAT
TATCGATTACTCTCTCAGC
TAATGATAATTTCATAATT
AATAGATAGCAATCACATT
TGTTGATAGTACTGATAGC
TATTTTTATAAGTGTTATT
AAGTGATGACTTTATTAAT
TATTGATGATTTACTAATT
TATTATCGATTAAGTCATT
TATTGTCGTGATAATTAGT
TATTCATGATTCTATAATT
TAATGACAGTATTGTCGTT
TATTGATAAATATGATATT
TATAGATTATTTACACTTT
TATTTACACTTTAATTAAC
ATGTGACATTTTTGTTAAT
AATTTAGAGTTTTCTTATT
AATAAATGTTTTTGTTACT
TATTGATATATTCATAAAT
TATTTATGAATATATCAAT
AATTGTTTTTATGGAAATT
TATTACTACTTTTATTATT
TATTATTTACTTTCACAGT
TTTAGATAGGTTTGTTAAT
TATTGATTCTTTTGTTTTT
TATTGTTGTTATTATCTTT
TAATGTCTTTATTATCATT
TAATGATAATAAAGACATT
TATTGTTTTTATAAAATTT
TATCGTCAATATTGTAATA
TATTGAGTAATCTCACTTT
TACTGTTATTTTTGACATT
AATTGACTTTAATGTCATT
TAATGACATTAAAGTCAAT
CATTGATATAGTTATTAGT
AACTAACATTGTTGTCAAT
TATTGACAACAATGTTAGT
TTTTGACATTTATATTGAC
TTTTGATTGTTTTATCACT
TATTGACAATTAAATTAAT
AATTAATTTAATTGTCAAT
TATTGATAATAAACAAAGT
TATTGATGCCTTAGTCGAC
TACTGATAGATTAGAAAAC
AATCGATGGTTTTAAAATC
TACTGACGAGTTAATCAGC
TACTGACTTTATTGATATA
AATTGATAGTTTGCTTAAG
TATTGATAATATTGTTGTA
TAATGACACTTTTAATAAC
TAGTGATACTACGGTTAAT
TACTGTCAAATTTATCACT
AAGTGATAAATTTGACAGT
TTGTGACAATTCTGACAAT
AATTGTCAGAATTGTCACA
AACTGATAATCCTATTTTT
TGTTTATAGTTATCTCAGT
TATTGATGTGTAAGACGTT
TTTTATCTAATTTATCATT
ATTTGATGTTTATATCAGT
TAATGACAATAAAAACAAT
TATTGTTTTTATTGTCATT
TGTTGATAGGTTTGATAAT
TATCGTTATTTAACTTAGT
TACTGAGATAAGTATCATT
TAATGATACTTATCTCAGT
TTTTGACACGTTTATCAGA
TATTCTTAATAATGTCATC
TATTGACTGAATGCTCATT
TGTTATCAATTAAGTCATT
TACTGACAAATAACTTTTC
TATTGATTGCTATGTCATT
TATTGTTATTATTGTTATT
TATTGTTATTTAGGACAAA
TCTTTTTAATTCTATCAAT
AATTGATAACTAACATACT
TCGTGATATCTTTATCAGT
TACTGATAGGATTCATAAT
TAGTGATCTATATCTTATT
TTGTGATTTTGTTATTATT
TATAGATAACTTTGTTACC
TATTGTCAGTTTTGTCTTT
TATCGATAAAAATGATATT
TATTGAGTTATTCGTTACT
TATTGATAAGTATGTCTAA
TATTGACAATAAACTAGAT
AATCGATATTCTTGTTAAC
TATTCATAATTTTGTTATA
AACTAATAATTCTGTAAAT
TATTTACAGAATTATTAGT
AACTAACTGTATTATCATT
TATTGATGGAATTAAAAGT
ATTTGATTAATTTGTTACT
TATTGATGAAAATGTAGGT
TTTTGATATTGATGAAAAT
TCTTGATAAGCTTGTCAGT
TATTGAGAACTTTATCTGC
TTTTGATTCTTTTCTCTGC
TATTGTTAGTTCTATTGGT
TGTTGTTTTTATTGTTAGT
ATTTGTTGTTTTTATTGTT
TACTGATAAATCTATTATC
TGTTGATGATTCTATCGTT
TAACGATATTAATGTCAGT
TACTGATATAATTATCGGT
AACCGATAATTATATCAGT
TAGTGTTAACTAACTTAAT
TATCAATTAATTGCTCATT
TATTGACACAGCAATTAAT
TGGTGATAATAGAGTTATT
AATTGATGATGTTATTGAT
TATTGATAGGTTGGTTGTC
TACCGACAATTCACTCAGT
TACTGACACTTTTAATTAT
TATTGATGATTGTGTCCTT
TAGTGATATTTTTGTTACA
AATCGATAAATATATAGTT
TATTGATACCTATAACACT
TAGTGTTATAGGTATCAAT
TATTGATAAGATACTCATC
TATTGAGCAAACTCTTAAT
TATTTATATTTTAGTAAAT
ATTTAATTATTTTGTTGTT
TATTGACCGTTTTATCATT
TAATATTGATATTATTATT
TATTGATATTATTATTGGT
TATTTACAGTTCAGTCAAT
AATTGACTGAACTGTAAAT
TATTGACCAATTAAACAAT
TATTGTTTAATTGGTCAAT
TTTTGATAAATCAGTCATT
TATCAATAAATCTGTTTGT
TTTTGATAACTATAACTTT
TCTTGACAATAAACACAAT
TACTGATTTCAATCTCAAT
TTTTGATGATTAACTTTGT
AATTGATATCTTGCTCAGC
AATTGATAAATTCAATAGC
TAATGACATTACTGTCTAT
TATAGACAGTAATGTCATT
AACTATTAAAATAATCAAT
AATTGATTATTTTAATAGT
TATTGTTGAGACTGTCGAT
TATTGATAATTTTATTTAT
TACTGATAATTTTCTCATT
TACTGTTGTTGTTGTAACT
TGTTGATATTTTAGTCACT
TATCAACTTATCTGTTATT
AATTGATAACTCGGTCAAC
TATTGTTTATTTACTCATC
TTTTGATATTTCTATCACA
TATTGTGATTACGGTTAAT
TATTGATGAATTCATTTAC
AATTTATATTTATAACTAT
TATTGATAGTTATAAATAT
TATTAACGCTTCTATTGAT
TTTTGACTTTTCTATCACC
TATTATCGACTTTATCGAT
TAGTGATCGTTCTCTTATC
TAATGATAGGTTTATAAGT
TATTGACGACTTTCTCAAC
TTCTGATTTTTTTAGTATT
TATTGAGTATTTTATTAGT
AACTAATAAAATACTCAAT
TATTGTTCAATTGATTAAT
TATTAATCAATTGAACAAT
TATTGATATTTATATCCTT
AATTGATGTATTTGGTTTT
TGGTGATAATTTGCACAGT
AATTGATAAAACTCTTAGA
TATTGATTGTGAACTCAAT
TATTAATCATTGTGTCATT
AATTGTTGCCTCTATCATT
TTTTGATGAGATTATCGAT
TATTGTGATTTTTATAATT
AAGTGACTAAAAAGTCATT
TAATGACTTTTTAGTCACT
TATTGATTTCAATGTCAGG
TAATGACATTTTTATTCAT
TATTGATGGTTATGACTCT
TATTGATTGTATAATCGCC
TATTGATGCATGTGACAAC
TACTGTCAGTTAGCTCAAT
TATTGATAATTCACACCAT
TACTGATGTTTTTATTAAA
AATTGATTCTTTTGTCAGC
TTTTGATTCCTTACTCATT
TACTGATAAATTAGATATT
TATTGACGATTACCTCAGT
TATTGATACTTTTCTCTTG
TATTGATAGAAATGGCTAT
TTGTGACAAGTTAGATATT
TTATGTTTGTTTTATTAAT
TAATGATATTTTAGTCAAA
TTTTGACTAAAATATCATT
TTTTGATAAAAATATATAT
AATTGATTGAATACTCTTT
TTCTGTTATTTTTGTCAAA
TTTTGATTCCTTTCTTATT
TATTGAGAAGAGTCTCAAT
AATTGAGACTCTTCTCAAT
AAGTGATATTTTTCGCAAT
TATCGATTTTGATGTCATC
TATTGATTACACAATCAAC
TATTGATGGTCCTGTCTGT
TAATAATAAGTTTGATAAT
TAATGATATAATTGACGTT
TATTGACTTGTAACTTAAT
TATTGACAGATTTGAAAGT
TTCTGACAAATTTAAAATC
TATTGATAATTCTCTTACC
TATTGATATTTATGACAGA
AATTGATTGTCATGTCACT
TAGTGACATGACAATCAAT
TGTTGTTTACTTTATCGGT
AATTGATACATGCGTCAGT
TATTGATATAACTAACATT
TATTCATAATTCTATTTGT
TATAGACTATATTGAAAGT
TATTGATGAGTTTGTTTTT
TGTTGATAAGTAAATTACT
TATTGCTTCATCTCTCATT
TATTGATAGTTAAGTTACT
AATAGATAACATTAAAAGT
TATTAACATTTTTATAAAG
TCTTTATAAAAATGTTAAT
TATTTATATTTTTATAGTT
TAGTAAGATTTTTATTGGT
TATTGCGATTTTTGATACC
TGTTGATAGGATAATCAGT
TATTGATATAACGATAATT
TATAAAGTTTTTTGTTATT
TACTGTGATCATTCTCAAT
AATTGAGAATGATCACAGT
ATTTGATAATTTTAATAAT
AGTTGTTAAAATAGTCATT
TAATGACTATTTTAACAAC
TATTGATTTCATAATTATG
AATTGAGTTTGTTGTTAAT
TATTTACAGTTTTGTATTT
TATTAATAAAATTATTAGT
AACTAATAATTTTATTAAT
TGTCGATTGTATTATTAGT
TTTTGATATATTTAAAAGC
TATTGTTGTTTTTCATAAT
TATAGATTTTACAGTTACT
AACTAATTCATTTATTATT
TGTTGATACCGTTATCATC
AATAGATATTTTTAACGGC
TATAAATAATTCTATAAAT
TAGTATCAATTTAATCAAT
TATTGATTAAATTGATACT
TATTATCAATTATCTTTGT
AATTGATAATATCGTTAAT
TACTGATACATGACTCAGC
TGCTGACCTATTTCTCATT
TACAGTTAGAATTGTTACT
TATTGTGGATATAATCATT
TAGTAACATGTATGTCAAT
AATTGACATACATGTTACT
TAATTTTAGTTTTGTCACT
AAGTGACAAAACTAAAATT
TTTTGATAGTTTTAACAAT
AATTGTTAAAACTATCAAA
AATCGATAATTAGCTCAAC
TATTGTTATCTGTATCATA
TATTGATGCCTTTATTAAT
TATTAACTTCTTTGTTATT
TCCTGATTTAATTATCAAT
AATTGATAATTAAATCAGG
TATTAACAAGTTTATAAAA
TATTGAGCACTTTGTAATT
TATTGATATTTACATTACT
TATTGCTAAAGTTGTCATT
TAATGACAACTTTAGCAAT
TAGAGTTATTATTCTTATT
TATTATTCTTATTGATAAT
TATTGATAATTATGACTAG
TACTGTGTATTTAGACAGT
TATCGATAGAACTAACAGT
AACTGTTAGTTCTATCGAT
CTTTGATATTTCAGTCAGT
AATTATTAAATCAATCAAT
AATTGATTGATTTAATAAT
TATCGATTACTCTCTCAGC
TAATGATAATTTCATAATT
AATAGATAGCAATCACATT
TGTTGATAGTACTGATAGC
TATTTTTATAAGTGTTATT
AAGTGATGACTTTATTAAT
TATTGATGATTTACTAATT
TATTATCGATTAAGTCATT
TATTGTCGTGATAATTAGT
TATTCATGATTCTATAATT
TAATGACAGTATTGTCGTT
TATTGATAAATATGATATT
TATAGATTATTTACACTTT
TATTTACACTTTAATTAAC
ATGTGACATTTTTGTTAAT
AATTTAGAGTTTTCTTATT
AATAAATGTTTTTGTTACT
TATTGATATATTCATAAAT
TATTTATGAATATATCAAT
AATTGTTTTTATGGAAATT
TATTACTACTTTTATTATT
TATTATTTACTTTCACAGT
TTTAGATAGGTTTGTTAAT
TATTGATTCTTTTGTTTTT
TATTGTTGTTATTATCTTT
TAATGTCTTTATTATCATT
TAATGATAATAAAGACATT
TATTGTTTTTATAAAATTT
TATCGTCAATATTGTAATA
TATTGAGTAATCTCACTTT
TACTGTTATTTTTGACATT
AATTGACTTTAATGTCATT
TAATGACATTAAAGTCAAT
CATTGATATAGTTATTAGT
AACTAACATTGTTGTCAAT
TATTGACAACAATGTTAGT
TTTTGACATTTATATTGAC
TTTTGATTGTTTTATCACT
TATTGACAATTAAATTAAT
AATTAATTTAATTGTCAAT
TATTGATAATAAACAAAGT
TATTGATGCCTTAGTCGAC
TACTGATAGATTAGAAAAC
AATCGATGGTTTTAAAATC
TACTGACGAGTTAATCAGC
TACTGACTTTATTGATATA
AATTGATAGTTTGCTTAAG
TATTGATAATATTGTTGTA
TAATGACACTTTTAATAAC
TAGTGATACTACGGTTAAT
TACTGTCAAATTTATCACT
AAGTGATAAATTTGACAGT
TTGTGACAATTCTGACAAT
AATTGTCAGAATTGTCACA
AACTGATAATCCTATTTTT
TGTTTATAGTTATCTCAGT
TATTGATGTGTAAGACGTT
TTTTATCTAATTTATCATT
ATTTGATGTTTATATCAGT
TAATGACAATAAAAACAAT
TATTGTTTTTATTGTCATT
TGTTGATAGGTTTGATAAT
TATCGTTATTTAACTTAGT
TACTGAGATAAGTATCATT
TAATGATACTTATCTCAGT
TTTTGACACGTTTATCAGA
TATTCTTAATAATGTCATC
TATTGACTGAATGCTCATT
TGTTATCAATTAAGTCATT
TACTGACAAATAACTTTTC
TATTGATTGCTATGTCATT
TATTGTTATTATTGTTATT
TATTGTTATTTAGGACAAA
TCTTTTTAATTCTATCAAT
AATTGATAACTAACATACT
TCGTGATATCTTTATCAGT
TACTGATAGGATTCATAAT
TAGTGATCTATATCTTATT
TTGTGATTTTGTTATTATT
TATAGATAACTTTGTTACC
TATTGTCAGTTTTGTCTTT
TATCGATAAAAATGATATT
TATTGAGTTATTCGTTACT
TATTGATAAGTATGTCTAA
TATTGACAATAAACTAGAT
AATCGATATTCTTGTTAAC
TATTCATAATTTTGTTATA
AACTAATAATTCTGTAAAT
TATTTACAGAATTATTAGT
AACTAACTGTATTATCATT
TATTGATGGAATTAAAAGT
ATTTGATTAATTTGTTACT
TATTGATGAAAATGTAGGT
TTTTGATATTGATGAAAAT
TCTTGATAAGCTTGTCAGT
TATTGAGAACTTTATCTGC
TTTTGATTCTTTTCTCTGC
TATTGTTAGTTCTATTGGT
TGTTGTTTTTATTGTTAGT
ATTTGTTGTTTTTATTGTT
TACTGATAAATCTATTATC
TGTTGATGATTCTATCGTT
TAACGATATTAATGTCAGT
TACTGATATAATTATCGGT
AACCGATAATTATATCAGT
TAGTGTTAACTAACTTAAT
TATCAATTAATTGCTCATT
TATTGACACAGCAATTAAT
TGGTGATAATAGAGTTATT
AATTGATGATGTTATTGAT
TATTGATAGGTTGGTTGTC
TACCGACAATTCACTCAGT
TACTGACACTTTTAATTAT
TATTGATGATTGTGTCCTT
TAGTGATATTTTTGTTACA
AATCGATAAATATATAGTT
TATTGATACCTATAACACT
TAGTGTTATAGGTATCAAT
TATTGATAAGATACTCATC
TATTGAGCAAACTCTTAAT
TATTTATATTTTAGTAAAT
ATTTAATTATTTTGTTGTT
TATTGACCGTTTTATCATT
TAATATTGATATTATTATT
TATTGATATTATTATTGGT
TATTTACAGTTCAGTCAAT
AATTGACTGAACTGTAAAT
TATTGACCAATTAAACAAT
TATTGTTTAATTGGTCAAT
TTTTGATAAATCAGTCATT
TATCAATAAATCTGTTTGT
TTTTGATAACTATAACTTT
TCTTGACAATAAACACAAT
TACTGATTTCAATCTCAAT
TTTTGATGATTAACTTTGT
AATTGATATCTTGCTCAGC
AATTGATAAATTCAATAGC
TAATGACATTACTGTCTAT
TATAGACAGTAATGTCATT
AACTATTAAAATAATCAAT
AATTGATTATTTTAATAGT
TATTGTTGAGACTGTCGAT
TATTGATAATTTTATTTAT
TACTGATAATTTTCTCATT
TACTGTTGTTGTTGTAACT
TGTTGATATTTTAGTCACT
TATCAACTTATCTGTTATT
AATTGATAACTCGGTCAAC
TATTGTTTATTTACTCATC
TTTTGATATTTCTATCACA
TATTGTGATTACGGTTAAT
TATTGATGAATTCATTTAC
AATTTATATTTATAACTAT
TATTGATAGTTATAAATAT
TATTAACGCTTCTATTGAT
TTTTGACTTTTCTATCACC
TATTATCGACTTTATCGAT
TAGTGATCGTTCTCTTATC
TAATGATAGGTTTATAAGT

Quantitative data format: CSDeconv score

TATTGACGACTTTCTCAAC 2.856728
TTCTGATTTTTTTAGTATT 2.483616
TATTGAGTATTTTATTAGT 2.421007
AACTAATAAAATACTCAAT 2.421007
TATTGTTCAATTGATTAAT 5.333296
TATTAATCAATTGAACAAT 5.333296
TATTGATATTTATATCCTT 34.068945
AATTGATGTATTTGGTTTT 9.504054
TGGTGATAATTTGCACAGT 8.11654
AATTGATAAAACTCTTAGA 4.673666
TATTGATTGTGAACTCAAT 10.675948
TATTAATCATTGTGTCATT 4.321234
AATTGTTGCCTCTATCATT 7.88354
TTTTGATGAGATTATCGAT 10.645102
TATTGTGATTTTTATAATT 4.120776
AAGTGACTAAAAAGTCATT 2.768312
TAATGACTTTTTAGTCACT 2.768312
TATTGATTTCAATGTCAGG 53.345009
TAATGACATTTTTATTCAT 7.369558
TATTGATGGTTATGACTCT 1.963461
TATTGATTGTATAATCGCC 7.866698
TATTGATGCATGTGACAAC 5.082162
TACTGTCAGTTAGCTCAAT 9.415382
TATTGATAATTCACACCAT 9.159865
TACTGATGTTTTTATTAAA 2.17655
AATTGATTCTTTTGTCAGC 12.402064
TTTTGATTCCTTACTCATT 10.624949
TACTGATAAATTAGATATT 23.747402
TATTGACGATTACCTCAGT 7.686518
TATTGATACTTTTCTCTTG 1.434044
TATTGATAGAAATGGCTAT 5.283115
TTGTGACAAGTTAGATATT 7.948415
TTATGTTTGTTTTATTAAT 9.636403
TAATGATATTTTAGTCAAA 9.636403
TTTTGACTAAAATATCATT 9.636403
TTTTGATAAAAATATATAT 9.636403
AATTGATTGAATACTCTTT 7.120642
TTCTGTTATTTTTGTCAAA 11.775225
TTTTGATTCCTTTCTTATT 11.775225
TATTGAGAAGAGTCTCAAT 6.099914
AATTGAGACTCTTCTCAAT 6.099914
AAGTGATATTTTTCGCAAT 2.384233
TATCGATTTTGATGTCATC 2.384233
TATTGATTACACAATCAAC 2.593874
TATTGATGGTCCTGTCTGT 8.259122
TAATAATAAGTTTGATAAT 5.858254
TAATGATATAATTGACGTT 3.676514
TATTGACTTGTAACTTAAT 71.996304
TATTGACAGATTTGAAAGT 71.996304
TTCTGACAAATTTAAAATC 71.996304
TATTGATAATTCTCTTACC 5.380011
TATTGATATTTATGACAGA 7.832686
AATTGATTGTCATGTCACT 4.814955
TAGTGACATGACAATCAAT 4.814955
TGTTGTTTACTTTATCGGT 3.554974
AATTGATACATGCGTCAGT 5.244747
TATTGATATAACTAACATT 12.74507
TATTCATAATTCTATTTGT 3.393486
TATAGACTATATTGAAAGT 22.164789
TATTGATGAGTTTGTTTTT 22.164789
TGTTGATAAGTAAATTACT 9.466886
TATTGCTTCATCTCTCATT 4.293586
TATTGATAGTTAAGTTACT 4.293586
AATAGATAACATTAAAAGT 20.606836
TATTAACATTTTTATAAAG 20.606836
TCTTTATAAAAATGTTAAT 20.606836
TATTTATATTTTTATAGTT 5.643319
TAGTAAGATTTTTATTGGT 2.685865
TATTGCGATTTTTGATACC 2.685865
TGTTGATAGGATAATCAGT 3.908482
TATTGATATAACGATAATT 148.45791
TATAAAGTTTTTTGTTATT 5.329534
TACTGTGATCATTCTCAAT 1.381934
AATTGAGAATGATCACAGT 1.381934
ATTTGATAATTTTAATAAT 1.381934
AGTTGTTAAAATAGTCATT 17.086965
TAATGACTATTTTAACAAC 17.086965
TATTGATTTCATAATTATG 17.086965
AATTGAGTTTGTTGTTAAT 3.241228
TATTTACAGTTTTGTATTT 49.362167
TATTAATAAAATTATTAGT 10.55695
AACTAATAATTTTATTAAT 10.55695
TGTCGATTGTATTATTAGT 11.122529
TTTTGATATATTTAAAAGC 6.679126
TATTGTTGTTTTTCATAAT 6.679126
TATAGATTTTACAGTTACT 5.779315
AACTAATTCATTTATTATT 5.779315
TGTTGATACCGTTATCATC 19.215261
AATAGATATTTTTAACGGC 7.804048
TATAAATAATTCTATAAAT 2.701006
TAGTATCAATTTAATCAAT 42.429637
TATTGATTAAATTGATACT 42.429637
TATTATCAATTATCTTTGT 6.222431
AATTGATAATATCGTTAAT 6.222431
TACTGATACATGACTCAGC 7.029615
TGCTGACCTATTTCTCATT 3.305056
TACAGTTAGAATTGTTACT 3.726658
TATTGTGGATATAATCATT 2.589774
TAGTAACATGTATGTCAAT 7.973762
AATTGACATACATGTTACT 7.973762
TAATTTTAGTTTTGTCACT 10.477099
AAGTGACAAAACTAAAATT 10.477099
TTTTGATAGTTTTAACAAT 19.901986
AATTGTTAAAACTATCAAA 19.901986
AATCGATAATTAGCTCAAC 5.305585
TATTGTTATCTGTATCATA 5.305585
TATTGATGCCTTTATTAAT 4.368838
TATTAACTTCTTTGTTATT 21.931609
TCCTGATTTAATTATCAAT 2.813515
AATTGATAATTAAATCAGG 2.813515
TATTAACAAGTTTATAAAA 5.156346
TATTGAGCACTTTGTAATT 5.156346
TATTGATATTTACATTACT 5.156346
TATTGCTAAAGTTGTCATT 74.581107
TAATGACAACTTTAGCAAT 74.581107
TAGAGTTATTATTCTTATT 9.683797
TATTATTCTTATTGATAAT 9.683797
TATTGATAATTATGACTAG 9.683797
TACTGTGTATTTAGACAGT 55.011282
TATCGATAGAACTAACAGT 55.011282
AACTGTTAGTTCTATCGAT 55.011282
CTTTGATATTTCAGTCAGT 6.303677
AATTATTAAATCAATCAAT 10.725673
AATTGATTGATTTAATAAT 10.725673
TATCGATTACTCTCTCAGC 6.065793
TAATGATAATTTCATAATT 6.358772
AATAGATAGCAATCACATT 6.525722
TGTTGATAGTACTGATAGC 3.656562
TATTTTTATAAGTGTTATT 3.656562
AAGTGATGACTTTATTAAT 23.996004
TATTGATGATTTACTAATT 40.236016
TATTATCGATTAAGTCATT 60.880895
TATTGTCGTGATAATTAGT 6.660068
TATTCATGATTCTATAATT 28.324966
TAATGACAGTATTGTCGTT 14.019576
TATTGATAAATATGATATT 4.170799
TATAGATTATTTACACTTT 4.170799
TATTTACACTTTAATTAAC 4.170799
ATGTGACATTTTTGTTAAT 4.170799
AATTTAGAGTTTTCTTATT 13.705964
AATAAATGTTTTTGTTACT 13.705964
TATTGATATATTCATAAAT 13.705964
TATTTATGAATATATCAAT 13.705964
AATTGTTTTTATGGAAATT 13.705964
TATTACTACTTTTATTATT 3.857357
TATTATTTACTTTCACAGT 3.857357
TTTAGATAGGTTTGTTAAT 1.645141
TATTGATTCTTTTGTTTTT 29.574776
TATTGTTGTTATTATCTTT 23.636781
TAATGTCTTTATTATCATT 23.636781
TAATGATAATAAAGACATT 23.636781
TATTGTTTTTATAAAATTT 23.636781
TATCGTCAATATTGTAATA 2.898829
TATTGAGTAATCTCACTTT 17.399248
TACTGTTATTTTTGACATT 6.286618
AATTGACTTTAATGTCATT 36.942924
TAATGACATTAAAGTCAAT 36.942924
CATTGATATAGTTATTAGT 5.961248
AACTAACATTGTTGTCAAT 7.879137
TATTGACAACAATGTTAGT 7.879137
TTTTGACATTTATATTGAC 7.879137
TTTTGATTGTTTTATCACT 9.741218
TATTGACAATTAAATTAAT 3.162273
AATTAATTTAATTGTCAAT 3.162273
TATTGATAATAAACAAAGT 3.759747
TATTGATGCCTTAGTCGAC 3.852594
TACTGATAGATTAGAAAAC 13.030499
AATCGATGGTTTTAAAATC 12.950975
TACTGACGAGTTAATCAGC 9.478271
TACTGACTTTATTGATATA 2.222313
AATTGATAGTTTGCTTAAG 2.222313
TATTGATAATATTGTTGTA 6.635959
TAATGACACTTTTAATAAC 9.174058
TAGTGATACTACGGTTAAT 3.307504
TACTGTCAAATTTATCACT 11.895764
AAGTGATAAATTTGACAGT 11.895764
TTGTGACAATTCTGACAAT 3.194111
AATTGTCAGAATTGTCACA 3.194111
AACTGATAATCCTATTTTT 5.175322
TGTTTATAGTTATCTCAGT 4.867724
TATTGATGTGTAAGACGTT 3.394246
TTTTATCTAATTTATCATT 5.180326
ATTTGATGTTTATATCAGT 5.180326
TAATGACAATAAAAACAAT 18.180251
TATTGTTTTTATTGTCATT 18.180251
TGTTGATAGGTTTGATAAT 20.862211
TATCGTTATTTAACTTAGT 21.873544
TACTGAGATAAGTATCATT 21.873544
TAATGATACTTATCTCAGT 21.873544
TTTTGACACGTTTATCAGA 17.012558
TATTCTTAATAATGTCATC 6.853024
TATTGACTGAATGCTCATT 26.222013
TGTTATCAATTAAGTCATT 25.156425
TACTGACAAATAACTTTTC 3.282523
TATTGATTGCTATGTCATT 17.133973
TATTGTTATTATTGTTATT 7.986713
TATTGTTATTTAGGACAAA 7.986713
TCTTTTTAATTCTATCAAT 2.031108
AATTGATAACTAACATACT 7.160026
TCGTGATATCTTTATCAGT 9.518201
TACTGATAGGATTCATAAT 8.000085
TAGTGATCTATATCTTATT 5.098965
TTGTGATTTTGTTATTATT 5.098965
TATAGATAACTTTGTTACC 1.231201
TATTGTCAGTTTTGTCTTT 3.798526
TATCGATAAAAATGATATT 7.997133
TATTGAGTTATTCGTTACT 4.547081
TATTGATAAGTATGTCTAA 2.427871
TATTGACAATAAACTAGAT 5.285318
AATCGATATTCTTGTTAAC 12.833355
TATTCATAATTTTGTTATA 5.531613
AACTAATAATTCTGTAAAT 13.125585
TATTTACAGAATTATTAGT 13.125585
AACTAACTGTATTATCATT 4.415369
TATTGATGGAATTAAAAGT 3.137163
ATTTGATTAATTTGTTACT 10.929824
TATTGATGAAAATGTAGGT 3.574145
TTTTGATATTGATGAAAAT 3.574145
TCTTGATAAGCTTGTCAGT 12.303123
TATTGAGAACTTTATCTGC 5.01819
TTTTGATTCTTTTCTCTGC 7.982822
TATTGTTAGTTCTATTGGT 3.106616
TGTTGTTTTTATTGTTAGT 3.106616
ATTTGTTGTTTTTATTGTT 3.106616
TACTGATAAATCTATTATC 11.014891
TGTTGATGATTCTATCGTT 8.584165
TAACGATATTAATGTCAGT 4.755693
TACTGATATAATTATCGGT 2.108257
AACCGATAATTATATCAGT 2.108257
TAGTGTTAACTAACTTAAT 13.120634
TATCAATTAATTGCTCATT 5.072064
TATTGACACAGCAATTAAT 7.08016
TGGTGATAATAGAGTTATT 6.945859
AATTGATGATGTTATTGAT 2.872872
TATTGATAGGTTGGTTGTC 5.611523
TACCGACAATTCACTCAGT 5.611523
TACTGACACTTTTAATTAT 6.728063
TATTGATGATTGTGTCCTT 4.409789
TAGTGATATTTTTGTTACA 8.239065
AATCGATAAATATATAGTT 1.742574
TATTGATACCTATAACACT 5.012035
TAGTGTTATAGGTATCAAT 5.012035
TATTGATAAGATACTCATC 23.748783
TATTGAGCAAACTCTTAAT 5.986258
TATTTATATTTTAGTAAAT 3.002427
ATTTAATTATTTTGTTGTT 74.437207
TATTGACCGTTTTATCATT 74.437207
TAATATTGATATTATTATT 5.023899
TATTGATATTATTATTGGT 5.023899
TATTTACAGTTCAGTCAAT 7.048576
AATTGACTGAACTGTAAAT 7.048576
TATTGACCAATTAAACAAT 10.315852
TATTGTTTAATTGGTCAAT 10.315852
TTTTGATAAATCAGTCATT 6.062911
TATCAATAAATCTGTTTGT 1.39554
TTTTGATAACTATAACTTT 13.883164
TCTTGACAATAAACACAAT 2.918901
TACTGATTTCAATCTCAAT 4.977552
TTTTGATGATTAACTTTGT 8.361023
AATTGATATCTTGCTCAGC 6.470799
AATTGATAAATTCAATAGC 5.50928
TAATGACATTACTGTCTAT 29.172628
TATAGACAGTAATGTCATT 29.172628
AACTATTAAAATAATCAAT 29.172628
AATTGATTATTTTAATAGT 29.172628
TATTGTTGAGACTGTCGAT 10.803553
TATTGATAATTTTATTTAT 6.11634
TACTGATAATTTTCTCATT 5.937236
TACTGTTGTTGTTGTAACT 1.307485
TGTTGATATTTTAGTCACT 4.881759
TATCAACTTATCTGTTATT 2.618999
AATTGATAACTCGGTCAAC 7.658509
TATTGTTTATTTACTCATC 5.396335
TTTTGATATTTCTATCACA 5.446935
TATTGTGATTACGGTTAAT 4.815237
TATTGATGAATTCATTTAC 12.605503
AATTTATATTTATAACTAT 4.375187
TATTGATAGTTATAAATAT 4.375187
TATTAACGCTTCTATTGAT 1.792219
TTTTGACTTTTCTATCACC 11.939084
TATTATCGACTTTATCGAT 3.611472
TAGTGATCGTTCTCTTATC 4.936282
TAATGATAGGTTTATAAGT 2.29982

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TATTGACGACTTTCTCAAC
... ... aroK VIBHAR_00029 aroB VIBHAR_00026 VIBHAR_00025 VIBHAR_00024
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTCTGATTTTTTTAGTATT
... ... VIBHAR_00039
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGAGTATTTTATTAGT
... ... VIBHAR_00045 VIBHAR_00046
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTAATAAAATACTCAAT
... ... VIBHAR_00045 VIBHAR_00046
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTCAATTGATTAAT
... ... VIBHAR_00049 metL VIBHAR_00050
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATCAATTGAACAAT
... ... VIBHAR_00049 metL VIBHAR_00050
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATTTATATCCTT
... ... VIBHAR_00081
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATGTATTTGGTTTT
... ... VIBHAR_00130 VIBHAR_00129 VIBHAR_00128 VIBHAR_00131 VIBHAR_00132 VIBHAR_00133 VIBHAR_00134
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGGTGATAATTTGCACAGT
... ... VIBHAR_00130 VIBHAR_00131 VIBHAR_00129 VIBHAR_00128 VIBHAR_00132 VIBHAR_00133 VIBHAR_00134
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAAAACTCTTAGA
... ... VIBHAR_00157 VIBHAR_00158 VIBHAR_00159 VIBHAR_00160 VIBHAR_00161
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTGTGAACTCAAT
... ... fis VIBHAR_00176 VIBHAR_00177 VIBHAR_00178
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATCATTGTGTCATT
... ... VIBHAR_00220 VIBHAR_00221
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTGCCTCTATCATT
... ... VIBHAR_00284 VIBHAR_00285 VIBHAR_00283 VIBHAR_00286
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATGAGATTATCGAT
... ... VIBHAR_00285 VIBHAR_00284 VIBHAR_00283 VIBHAR_00286
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTGATTTTTATAATT
... ... VIBHAR_00298 VIBHAR_00297 VIBHAR_00296 VIBHAR_00295
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGACTAAAAAGTCATT
... ... VIBHAR_00304 VIBHAR_00305
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACTTTTTAGTCACT
... ... VIBHAR_00304 VIBHAR_00305
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTTCAATGTCAGG
... ... VIBHAR_00305 VIBHAR_00306
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACATTTTTATTCAT
... ... VIBHAR_00305 VIBHAR_00306
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGGTTATGACTCT
... ... VIBHAR_00364 thiE VIBHAR_00363 thiG thiH
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTGTATAATCGCC
... ... VIBHAR_00401 VIBHAR_00402 VIBHAR_00403 VIBHAR_00404 VIBHAR_00405
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGCATGTGACAAC
... ... VIBHAR_00401 VIBHAR_00402 VIBHAR_00403 VIBHAR_00404 VIBHAR_00405
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGTCAGTTAGCTCAAT
... ... VIBHAR_00441 VIBHAR_00440 VIBHAR_00439 dnaA VIBHAR_00443 recF gyrB
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATTCACACCAT
... ... VIBHAR_00451 VIBHAR_00452
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATGTTTTTATTAAA
... ... VIBHAR_00479 VIBHAR_00480
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATTCTTTTGTCAGC
... ... VIBHAR_00498 VIBHAR_00499 VIBHAR_00497
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATTCCTTACTCATT
... ... VIBHAR_00501 VIBHAR_00503
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATAAATTAGATATT
... ... VIBHAR_00506 VIBHAR_00505 VIBHAR_00504 VIBHAR_00503 VIBHAR_00507 VIBHAR_00508
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACGATTACCTCAGT
... ... VIBHAR_00526 VIBHAR_00527 VIBHAR_00528 VIBHAR_00529
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATACTTTTCTCTTG
... ... VIBHAR_00529 VIBHAR_00530
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAGAAATGGCTAT
... ... VIBHAR_00575
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTGTGACAAGTTAGATATT
... ... VIBHAR_00689 wecC VIBHAR_00691 VIBHAR_00692 VIBHAR_00693 VIBHAR_00694 VIBHAR_00695 VIBHAR_00696 VIBHAR_00697 VIBHAR_00698
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTATGTTTGTTTTATTAAT
... ... VIBHAR_00692 VIBHAR_00693 VIBHAR_00694 VIBHAR_00695 VIBHAR_00696 VIBHAR_00697 VIBHAR_00698
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGATATTTTAGTCAAA
... ... VIBHAR_00692 VIBHAR_00693 VIBHAR_00694 VIBHAR_00695 VIBHAR_00696 VIBHAR_00697 VIBHAR_00698
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGACTAAAATATCATT
... ... VIBHAR_00692 VIBHAR_00693 VIBHAR_00694 VIBHAR_00695 VIBHAR_00696 VIBHAR_00697 VIBHAR_00698
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATAAAAATATATAT
... ... VIBHAR_00692 VIBHAR_00693 VIBHAR_00694 VIBHAR_00695 VIBHAR_00696 VIBHAR_00697 VIBHAR_00698
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATTGAATACTCTTT
... ... VIBHAR_00703 VIBHAR_00704
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTCTGTTATTTTTGTCAAA
... ... tpiA VIBHAR_00710 VIBHAR_00711
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATTCCTTTCTTATT
... ... tpiA VIBHAR_00710 VIBHAR_00711
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGAGAAGAGTCTCAAT
... ... VIBHAR_00756 VIBHAR_00757 VIBHAR_00758
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGAGACTCTTCTCAAT
... ... VIBHAR_00756 VIBHAR_00757 VIBHAR_00758
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGATATTTTTCGCAAT
... ... VIBHAR_00779 VIBHAR_00780 VIBHAR_00781 VIBHAR_00782 VIBHAR_00783
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGATTTTGATGTCATC
... ... VIBHAR_00779 VIBHAR_00780 VIBHAR_00781 VIBHAR_00782 VIBHAR_00783
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTACACAATCAAC
... ... VIBHAR_00786 VIBHAR_00787 tbpA thiP VIBHAR_00790
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGGTCCTGTCTGT
... ... VIBHAR_00791 VIBHAR_00792
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATAATAAGTTTGATAAT
... ... leuO VIBHAR_00824
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGATATAATTGACGTT
... ... ilvH VIBHAR_00827
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACTTGTAACTTAAT
... ... VIBHAR_00834 VIBHAR_00833 mtlR
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGACAGATTTGAAAGT
... ... VIBHAR_00834 VIBHAR_00833 mtlR
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTCTGACAAATTTAAAATC
... ... VIBHAR_00834 VIBHAR_00833 mtlR
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATTCTCTTACC
... ... VIBHAR_00848 dnaG VIBHAR_00847 VIBHAR_00846 VIBHAR_00845 VIBHAR_00844
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATTTATGACAGA
... ... VIBHAR_00857 cca VIBHAR_00859 VIBHAR_00860
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATTGTCATGTCACT
... ... VIBHAR_00870 VIBHAR_00871 VIBHAR_00872 VIBHAR_00873 VIBHAR_00874 VIBHAR_00875 VIBHAR_00876
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTGACATGACAATCAAT
... ... VIBHAR_00870 VIBHAR_00871 VIBHAR_00872 VIBHAR_00873 VIBHAR_00874 VIBHAR_00875 VIBHAR_00876
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGTTTACTTTATCGGT
... ... VIBHAR_00874 VIBHAR_00875 VIBHAR_00876
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATACATGCGTCAGT
... ... 1000000 VIBHAR_00991 VIBHAR_00992 tyrA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATAACTAACATT
... ... VIBHAR_01029 VIBHAR_01030 VIBHAR_01031 VIBHAR_01032 VIBHAR_01033 VIBHAR_01034 VIBHAR_01035 VIBHAR_01036
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTCATAATTCTATTTGT
... ... VIBHAR_01039 VIBHAR_01040 VIBHAR_01041 VIBHAR_01042
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAGACTATATTGAAAGT
... ... VIBHAR_01044 queA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGAGTTTGTTTTT
... ... VIBHAR_01044 queA
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGATAAGTAAATTACT
... ... VIBHAR_01112
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGCTTCATCTCTCATT
... ... VIBHAR_01112
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAGTTAAGTTACT
... ... VIBHAR_01112
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATAGATAACATTAAAAGT
... ... VIBHAR_01132 VIBHAR_01133
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACATTTTTATAAAG
... ... VIBHAR_01132 VIBHAR_01133
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TCTTTATAAAAATGTTAAT
... ... VIBHAR_01132 VIBHAR_01133
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTATATTTTTATAGTT
... ... VIBHAR_01132 VIBHAR_01133
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTAAGATTTTTATTGGT
... ... VIBHAR_01132 VIBHAR_01133 dnaK
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGCGATTTTTGATACC
... ... VIBHAR_01132 VIBHAR_01133 dnaK
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGATAGGATAATCAGT
... ... VIBHAR_01138 VIBHAR_01139 VIBHAR_01140
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATAACGATAATT
... ... VIBHAR_01178 VIBHAR_01179 VIBHAR_01180 VIBHAR_01181
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAAAGTTTTTTGTTATT
... ... VIBHAR_01191
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGTGATCATTCTCAAT
... ... treR VIBHAR_01205 VIBHAR_01206
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGAGAATGATCACAGT
... ... treR VIBHAR_01205 VIBHAR_01206
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
ATTTGATAATTTTAATAAT
... ... treR VIBHAR_01205 VIBHAR_01206
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AGTTGTTAAAATAGTCATT
... ... VIBHAR_01255 ushA VIBHAR_01257
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACTATTTTAACAAC
... ... VIBHAR_01255 ushA VIBHAR_01257
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTTCATAATTATG
... ... VIBHAR_01255 ushA VIBHAR_01257
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGAGTTTGTTGTTAAT
... ... VIBHAR_01264 VIBHAR_01265
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTACAGTTTTGTATTT
... ... VIBHAR_01273 VIBHAR_01274
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAATAAAATTATTAGT
... ... VIBHAR_01273 VIBHAR_01274
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTAATAATTTTATTAAT
... ... VIBHAR_01273 VIBHAR_01274
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTCGATTGTATTATTAGT
... ... VIBHAR_01320 VIBHAR_01319 VIBHAR_01321 VIBHAR_01322
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATATATTTAAAAGC
... ... adk hemH
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTGTTTTTCATAAT
... ... adk hemH
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAGATTTTACAGTTACT
... ... VIBHAR_01334 nagA VIBHAR_01333 VIBHAR_01336
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTAATTCATTTATTATT
... ... nagA VIBHAR_01334 VIBHAR_01333 VIBHAR_01336
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGATACCGTTATCATC
... ... VIBHAR_01371 VIBHAR_01372 VIBHAR_01370
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATAGATATTTTTAACGGC
... ... VIBHAR_01371 VIBHAR_01372 VIBHAR_01370
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATAAATAATTCTATAAAT
... ... VIBHAR_01397 VIBHAR_01398 VIBHAR_01399 VIBHAR_01400 entF VIBHAR_01402
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTATCAATTTAATCAAT
... ... VIBHAR_01446 VIBHAR_01447
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATTAAATTGATACT
... ... VIBHAR_01446 VIBHAR_01447
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATCAATTATCTTTGT
... ... VIBHAR_01493 VIBHAR_01494 VIBHAR_01495
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAATATCGTTAAT
... ... VIBHAR_01493 VIBHAR_01494 VIBHAR_01495
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGATACATGACTCAGC
... ... glgA VIBHAR_01577
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGCTGACCTATTTCTCATT
... ... VIBHAR_01581
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACAGTTAGAATTGTTACT
... ... VIBHAR_01613 VIBHAR_01614 VIBHAR_01615 VIBHAR_01616 VIBHAR_01617 VIBHAR_01618
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTGGATATAATCATT
... ... VIBHAR_01626 VIBHAR_01627 VIBHAR_01628 VIBHAR_01629
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGTAACATGTATGTCAAT
... ... VIBHAR_01636 VIBHAR_01637
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGACATACATGTTACT
... ... VIBHAR_01636 VIBHAR_01637
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATTTTAGTTTTGTCACT
... ... VIBHAR_01649 VIBHAR_01650 VIBHAR_01651 VIBHAR_01652 VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGACAAAACTAAAATT
... ... VIBHAR_01649 VIBHAR_01650 VIBHAR_01651 VIBHAR_01652 VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TTTTGATAGTTTTAACAAT
... ... VIBHAR_01650 VIBHAR_01651 VIBHAR_01652 VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGTTAAAACTATCAAA
... ... VIBHAR_01650 VIBHAR_01651 VIBHAR_01652 VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATCGATAATTAGCTCAAC
... ... VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTTATCTGTATCATA
... ... VIBHAR_01653 VIBHAR_01654 VIBHAR_01655 VIBHAR_01656 VIBHAR_01657
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGCCTTTATTAAT
... ... VIBHAR_01688 VIBHAR_01689 VIBHAR_01690 VIBHAR_01691
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACTTCTTTGTTATT
... ... VIBHAR_01749 VIBHAR_01748 VIBHAR_01747 VIBHAR_01750 VIBHAR_01751 VIBHAR_01752
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TCCTGATTTAATTATCAAT
... ... VIBHAR_01749 VIBHAR_01748 VIBHAR_01747 VIBHAR_01750 VIBHAR_01751 VIBHAR_01752
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATAATTAAATCAGG
... ... VIBHAR_01749 VIBHAR_01748 VIBHAR_01747 VIBHAR_01750 VIBHAR_01751 VIBHAR_01752
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTAACAAGTTTATAAAA
... ... VIBHAR_01762 VIBHAR_01763 VIBHAR_01764 VIBHAR_01765 VIBHAR_01766 VIBHAR_01767
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGAGCACTTTGTAATT
... ... VIBHAR_01762 VIBHAR_01763 VIBHAR_01764 VIBHAR_01765 VIBHAR_01766 VIBHAR_01767
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATATTTACATTACT
... ... VIBHAR_01762 VIBHAR_01763 VIBHAR_01764 VIBHAR_01765 VIBHAR_01766 VIBHAR_01767
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGCTAAAGTTGTCATT
... ... VIBHAR_01769 VIBHAR_01771 VIBHAR_01772
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACAACTTTAGCAAT
... ... VIBHAR_01769 VIBHAR_01771 VIBHAR_01772
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAGAGTTATTATTCTTATT
... ... VIBHAR_01777 VIBHAR_01776 VIBHAR_01778 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATTCTTATTGATAAT
... ... VIBHAR_01777 VIBHAR_01776 VIBHAR_01778 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATAATTATGACTAG
... ... VIBHAR_01777 VIBHAR_01776 VIBHAR_01778 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TACTGTGTATTTAGACAGT
... ... VIBHAR_01777 VIBHAR_01776 VIBHAR_01778 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGATAGAACTAACAGT
... ... VIBHAR_01777 VIBHAR_01778 VIBHAR_01776 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AACTGTTAGTTCTATCGAT
... ... VIBHAR_01777 VIBHAR_01778 VIBHAR_01776 VIBHAR_01779 VIBHAR_01780
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
CTTTGATATTTCAGTCAGT
... ... VIBHAR_01781
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTATTAAATCAATCAAT
... ... VIBHAR_01781
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATTGATTGATTTAATAAT
... ... VIBHAR_01781
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATCGATTACTCTCTCAGC
... ... VIBHAR_01851 VIBHAR_01852
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGATAATTTCATAATT
... ... VIBHAR_01883 VIBHAR_01884
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AATAGATAGCAATCACATT
... ... VIBHAR_01892 VIBHAR_01891
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TGTTGATAGTACTGATAGC
... ... VIBHAR_01898 VIBHAR_01899 VIBHAR_01900
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTTTTATAAGTGTTATT
... ... VIBHAR_01898 VIBHAR_01899 VIBHAR_01900
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
AAGTGATGACTTTATTAAT
... ... VIBHAR_01909 VIBHAR_01910 VIBHAR_01908 VIBHAR_01907 VIBHAR_01906 VIBHAR_01905 VIBHAR_01911 VIBHAR_01912 VIBHAR_01913
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGATGATTTACTAATT
... ... VIBHAR_01931 VIBHAR_01932
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTATCGATTAAGTCATT
... ... VIBHAR_01936 VIBHAR_01937
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTGTCGTGATAATTAGT
... ... 2000000 VIBHAR_02008 VIBHAR_02007 VIBHAR_02009 VIBHAR_02010 VIBHAR_02011
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TATTCATGATTCTATAATT
... ... VIBHAR_02014 VIBHAR_02015 VIBHAR_02016 VIBHAR_02017 VIBHAR_02018
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - not specified dimer
TAATGACAGTATTGTCGTT
... ... VIBHAR_02034 VIBHAR_02035
Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525)