Curation Information

Publication

Molecular and physiological analysis of an OxyR-regulated ahpC promoter in Xanthomonas campestris pv. phaseoli.;Loprasert S, Fuangthong M, Whangsuk W, Atichartpongkul S, Mongkolsuk S;Molecular microbiology 2000 Sep; 37(6):1504-14 [10998180]

TF

OxyR [Q8PCA2, view regulon]

Reported TF sp.

Xanthomonas campestris pv. phaseoli

Reported site sp.

Xanthomonas campestris pv. phaseoli

Created by

Dinara Sagitova

Curation notes

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Experimental Process

Primer extension analysis identified the ahpC transcription start site. EMSA confirmed that OxyR binds to the ahpC promoter. DNase I footprinting localized OxyR binding site on the ahpC promoter. CAT reporter assays confirmed OxyR-dependent repression of ahpC.

Transcription Factor Binding Sites

• Sites reported in the paper
• Sites matched in the genome

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.