PvdS - UniProtKB: G3XCV1 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

GGTATTTAGCG
ACGTAAATTGC
TAAATTTCATTTCCCTGTCCTCGT
TAATTTTCCCGCCGGGCTTTTCGT
TAAATCCGTGCGTCCCTCCTGCGT
TAAATTCGCGGCGGGATGCGACGT
CAAATTTCCGCTGTGATCGTACGT
TAAATTGCAGGCGATGCCGTTCGT
TAAATTTTCCCGCTCCGGCCTCGT
TAATTATTTGCCGTTGTTATCCGT
TAAATACCGGGCATCCTGCTTCGT
TAATTTTCACGATGTGTCGTCCGT
TAAATTTAGCCGCCCTGGCCTCGT
TAAATTTGCCGACGGAAGGAACGT
GAAAGATCCGCCGCGGCGATTCGT
TAAACCGGCCTGGCGCAGCATCGT
TAAAAAATATTTGAACGACTCCGT
TGAATCGTGCCCGGCCAACGGCGT
TGAATGGCCGCTTCGATTCCTCGT
TAAAACCGTCAAGCCTTTATCCGT
TAAATATCCGGATTTTCTTTTCGT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CGGTATTTAGCGGCGTTCGGCGGG
ACGTAAATTGCAGGCGATGCCGTT
ACGAGGACAGGGAAATGAAATTTA
ACGAAAAGCCCGGCGGGAAAATTA
ACGCAGGAGGGACGCACGGATTTA
ACGTCGCATCCCGCCGCGAATTTA
ACGTACGATCACAGCGGAAATTTG
ACGAACGGCATCGCCTGCAATTTA
ACGAGGCCGGAGCGGGAAAATTTA
ACGGATAACAACGGCAAATAATTA
ACGAAGCAGGATGCCCGGTATTTA
ACGGACGACACATCGTGAAAATTA
ACGAGGCCAGGGCGGCTAAATTTA
ACGTTCCTTCCGTCGGCAAATTTA
ACGAATCGCCGCGGCGGATCTTTC
ACGATGCTGCGCCAGGCCGGTTTA
ACGGAGTCGTTCAAATATTTTTTA
ACGCCGTTGGCCGGGCACGATTCA
ACGAGGAATCGAAGCGGCCATTCA
ACGGATAAAGGCTTGACGGTTTTA
ACGAAAAGAAAATCCGGATATTTA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 G3XCV1 not specified GGTATTTAGCG -[2653219:2653229] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) pvdF (PA2396) , pvdE (PA2397) , fpvA (PA2398)
    ... ... pvdF pvdE fpvA
    797 11222621
    NC_002516.2 G3XCV1 not specified ACGTAAATTGC -[2653182:2653192] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) pvdE (PA2397) , pvdF (PA2396) , fpvA (PA2398)
    ... ... pvdE pvdF fpvA
    797 11222621
    NC_002516.2 G3XCV1 not specified TAAATTTCATTTCCCTGTCCTCGT -[2640341:2640364] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdA (PA2386) , pvdQ (PA2385)
    ... ... pvdA pvdQ
    801 12207696
    NC_002516.2 G3XCV1 not specified TAATTTTCCCGCCGGGCTTTTCGT -[2694820:2694843] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2412 , PA2411 , pvdH (PA2413)
    ... ... PA2412 PA2411 pvdH
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATCCGTGCGTCCCTCCTGCGT -[2696340:2696363] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdH (PA2413) , PA2412 , PA2411
    ... ... pvdH PA2412 PA2411
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATTCGCGGCGGGATGCGACGT -[2723252:2723275] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2427
    ... ... PA2427
    801 12207696
    NC_002516.2 G3XCV1 not specified CAAATTTCCGCTGTGATCGTACGT -[2754495:2754518] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2452 , PA2451 , PA2453 , PA2454 , PA2455 , PA2456
    ... ... PA2452 PA2451 PA2453 PA2454 PA2455 PA2456
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATTGCAGGCGATGCCGTTCGT -[2653166:2653189] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdF (PA2396) , pvdE (PA2397) , fpvA (PA2398)
    ... ... pvdF pvdE fpvA
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATTTTCCCGCTCCGGCCTCGT +[2648527:2648550] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2393 , pvdN (PA2394) , pvdO (PA2395) , pvdP (PA2392)
    ... ... PA2393 pvdN pvdO pvdP
    801 12207696
    NC_002516.2 G3XCV1 not specified TAATTATTTGCCGTTGTTATCCGT -[2721663:2721686] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdG (PA2425) , pvdL (PA2424) , pvdS (PA2426)
    ... ... pvdG pvdL pvdS
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATACCGGGCATCCTGCTTCGT +[2653222:2653245] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdE (PA2397) , pvdF (PA2396) , fpvA (PA2398)
    ... ... pvdE pvdF fpvA
    801 12207696
    NC_002516.2 G3XCV1 not specified TAATTTTCACGATGTGTCGTCCGT -[2687233:2687256] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2402 , pvdJ (PA2400) , pvdD (PA2399) , PA2403 , PA2404 , PA2405 , PA2406 , PA2407 , PA2408 , PA2409 , PA2410
    ... ... PA2402 pvdJ pvdD PA2403 PA2404 PA2405 PA2406 PA2407 PA2408 PA2409 PA2410
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATTTAGCCGCCCTGGCCTCGT +[2642038:2642061] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391)
    ... ... pvdR pvdT opmQ
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATTTGCCGACGGAAGGAACGT -[2648454:2648477] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdP (PA2392) , PA2393 , pvdN (PA2394) , pvdO (PA2395)
    ... ... pvdP PA2393 pvdN pvdO
    801 12207696
    NC_002516.2 G3XCV1 not specified GAAAGATCCGCCGCGGCGATTCGT -[5799487:5799510] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA5150 , PA5151
    ... ... PA5150 PA5151
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAACCGGCCTGGCGCAGCATCGT -[1226333:1226356] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA1134 , PA1133
    ... ... PA1134 PA1133
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAAAAATATTTGAACGACTCCGT +[4671222:4671245] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) piv (PA4175)
    ... ... piv
    801 12207696
    NC_002516.2 G3XCV1 not specified TGAATCGTGCCCGGCCAACGGCGT +[389175:389198] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0346 , PA0345 , PA0344 , PA0343
    ... ... PA0346 PA0345 PA0344 PA0343
    801 12207696
    NC_002516.2 G3XCV1 not specified TGAATGGCCGCTTCGATTCCTCGT -[895723:895746] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0818 , PA0819
    ... ... PA0818 PA0819
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAAACCGTCAAGCCTTTATCCGT +[5423944:5423967] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4833 , PA4832
    ... ... PA4833 PA4832
    801 12207696
    NC_002516.2 G3XCV1 not specified TAAATATCCGGATTTTCTTTTCGT -[1087441:1087464] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) mvfR (PA1003) , nadA (PA1004)
    ... ... mvfR nadA
    801 12207696

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GGTATTTAGCG
    ACGTAAATTGC
    TAAATTTCATTTCCCTGTCCTCGT
    TAATTTTCCCGCCGGGCTTTTCGT
    TAAATCCGTGCGTCCCTCCTGCGT
    TAAATTCGCGGCGGGATGCGACGT
    CAAATTTCCGCTGTGATCGTACGT
    TAAATTGCAGGCGATGCCGTTCGT
    TAAATTTTCCCGCTCCGGCCTCGT
    TAATTATTTGCCGTTGTTATCCGT
    TAAATACCGGGCATCCTGCTTCGT
    TAATTTTCACGATGTGTCGTCCGT
    TAAATTTAGCCGCCCTGGCCTCGT
    TAAATTTGCCGACGGAAGGAACGT
    GAAAGATCCGCCGCGGCGATTCGT
    TAAACCGGCCTGGCGCAGCATCGT
    TAAAAAATATTTGAACGACTCCGT
    TGAATCGTGCCCGGCCAACGGCGT
    TGAATGGCCGCTTCGATTCCTCGT
    TAAAACCGTCAAGCCTTTATCCGT
    TAAATATCCGGATTTTCTTTTCGT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CGGTATTTAGCGGCGTTCGGCGGG
    ACGTAAATTGCAGGCGATGCCGTT
    ACGAGGACAGGGAAATGAAATTTA
    ACGAAAAGCCCGGCGGGAAAATTA
    ACGCAGGAGGGACGCACGGATTTA
    ACGTCGCATCCCGCCGCGAATTTA
    ACGTACGATCACAGCGGAAATTTG
    ACGAACGGCATCGCCTGCAATTTA
    ACGAGGCCGGAGCGGGAAAATTTA
    ACGGATAACAACGGCAAATAATTA
    ACGAAGCAGGATGCCCGGTATTTA
    ACGGACGACACATCGTGAAAATTA
    ACGAGGCCAGGGCGGCTAAATTTA
    ACGTTCCTTCCGTCGGCAAATTTA
    ACGAATCGCCGCGGCGGATCTTTC
    ACGATGCTGCGCCAGGCCGGTTTA
    ACGGAGTCGTTCAAATATTTTTTA
    ACGCCGTTGGCCGGGCACGATTCA
    ACGAGGAATCGAAGCGGCCATTCA
    ACGGATAAAGGCTTGACGGTTTTA
    ACGAAAAGAAAATCCGGATATTTA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.