GlnR - UniProtKB: A4FQD5 regulon and binding site collection of Saccharopolyspora erythraea NRRL 2338


Sites are listed as curated.

TCAACAGCTCAGAAAC
TTAACGCCCGCGAAAC
TTAACAGTCAAGATAC
TTCACGCTCCGGAAAC
TTCACGCTCCGGAAAC
TGAGCAACCGCGAAAC
CAAACGCCTGAAAAAA
TCAACTTTTCCTCAAC
TTATCGTTCCAGCAAC
CAAACGCCTGAAAAAA
AGCAGCACTGGGAATC
GCAACGCTGCGGAAAC
GTTACATGCCGGACGC
CGCACCCTGGAGGAAC
TCAACAGCTCAGAAAC
TTAACGCCCGCGAAAC
GACACGATGGCCGAAA
TCAACTTTTCCTCAAC
GCAACCCGCCGGTAAC
GGCACAGACCCGAATC
AGCACAATGGTGAAAT
TTTGCATCTCGGTAAC
GCTACCGTTAAGTAAC
TGAACAATGCCGCAAA
GCAACATGTGGTTCAC
CGCACAACGACGACAC
TTAACAGTCAAGATAC
TTAGCGCGACGGAAAC
GCAACCGCGGCGAAAC
TTATCGTTCCAGCAAC
TTCACGCTCCGGAAAC
GACACATGCCCGTAAC
GTCACGGACCCGTAAA
GTAACGCGTTCGAAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TCAACAGCTCAGAAAC
TTAACGCCCGCGAAAC
TTAACAGTCAAGATAC
TTCACGCTCCGGAAAC
TTCACGCTCCGGAAAC
TGAGCAACCGCGAAAC
CAAACGCCTGAAAAAA
TCAACTTTTCCTCAAC
TTATCGTTCCAGCAAC
CAAACGCCTGAAAAAA
AGCAGCACTGGGAATC
GCAACGCTGCGGAAAC
GTTACATGCCGGACGC
CGCACCCTGGAGGAAC
TCAACAGCTCAGAAAC
TTAACGCCCGCGAAAC
GACACGATGGCCGAAA
TCAACTTTTCCTCAAC
GCAACCCGCCGGTAAC
GGCACAGACCCGAATC
AGCACAATGGTGAAAT
TTTGCATCTCGGTAAC
GCTACCGTTAAGTAAC
TGAACAATGCCGCAAA
GCAACATGTGGTTCAC
CGCACAACGACGACAC
TTAACAGTCAAGATAC
TTAGCGCGACGGAAAC
GCAACCGCGGCGAAAC
TTATCGTTCCAGCAAC
TTCACGCTCCGGAAAC
GACACATGCCCGTAAC
TTTACGGGTCCGTGAC
GTAACGCGTTCGAAAC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_009142.1 A4FQD5 not specified TCAACAGCTCAGAAAC +[1785103:1785118] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SACE_1618 , SACE_1617 , glnE (SACE_1619) , SACE_1620
    ... ... SACE_1618 SACE_1617 glnE SACE_1620
    832 24931311
    NC_009142.1 A4FQD5 not specified TTAACGCCCGCGAAAC -[1793129:1793144] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SACE_1623 , SACE_1624
    ... ... SACE_1623 SACE_1624
    832 24931311
    NC_009142.1 A4FQD5 not specified TTAACAGTCAAGATAC +[6455262:6455277] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) gltB (SACE_5742) , SACE_5741 , SACE_5743 , SACE_5744 , SACE_5745
    ... ... gltB SACE_5741 SACE_5743 SACE_5744 SACE_5745
    832 24931311
    NC_009142.1 A4FQD5 not specified TTCACGCTCCGGAAAC -[6799670:6799685] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) amt (SACE_6062) , glnB (SACE_6061)
    ... ... amt glnB
    832 24931311
    NC_009142.1 A4FQD5 not specified TTCACGCTCCGGAAAC -[6799670:6799685] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) amt (SACE_6062) , glnB (SACE_6061)
    ... ... amt glnB
    832 24931311
    NC_009142.1 A4FQD5 not specified TGAGCAACCGCGAAAC +[5658176:5658191] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SACE_5070 , aspA (SACE_5071) , racX (SACE_5069) , SACE_5068 , SACE_5072
    ... ... SACE_5070 aspA racX SACE_5068 SACE_5072
    832 24931311
    NC_009142.1 A4FQD5 not specified CAAACGCCTGAAAAAA +[697442:697457] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) ureA (SACE_0634) , citA (SACE_0633) , citA4 (SACE_0632) , SACE_0631 , ureB (SACE_0635) , ureC (SACE_0636) , ureF (SACE_0637) , ureG (SACE_0638) , ureD (SACE_0639)
    ... ... ureA citA citA4 SACE_0631 ureB ureC ureF ureG ureD
    832 24931311
    NC_009142.1 A4FQD5 not specified TCAACTTTTCCTCAAC +[3088631:3088646] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SACE_2830 , aspA (SACE_2829) , SACE_2831
    ... ... SACE_2830 aspA SACE_2831
    832 24931311
    NC_009142.1 A4FQD5 not specified TTATCGTTCCAGCAAC +[6713006:6713021] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) gdh (SACE_5979)
    ... ... gdh
    832 24931311
    NC_009142.1 A4FQD5 not specified CAAACGCCTGAAAAAA +[697442:697457] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ureA (SACE_0634) , citA (SACE_0633) , citA4 (SACE_0632) , SACE_0631 , ureB (SACE_0635) , ureC (SACE_0636) , ureF (SACE_0637) , ureG (SACE_0638) , ureD (SACE_0639)
    ... ... ureA citA citA4 SACE_0631 ureB ureC ureF ureG ureD
    832 24931311
    NC_009142.1 A4FQD5 not specified AGCAGCACTGGGAATC +[1466430:1466445] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gudB (SACE_1325) , SACE_1324 , SACE_1326 , SACE_1327
    ... ... gudB SACE_1324 SACE_1326 SACE_1327
    832 24931311
    NC_009142.1 A4FQD5 not specified GCAACGCTGCGGAAAC +[1629622:1629637] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) nirA (SACE_1476) , SACE_1477
    ... ... nirA SACE_1477
    832 24931311
    NC_009142.1 A4FQD5 not specified GTTACATGCCGGACGC -[1767891:1767906] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) nadE (SACE_1610) , helZ (SACE_1609) , SACE_1608 , SACE_1611 , SACE_1612 , glnA2 (SACE_1613) , SACE_1614
    ... ... nadE helZ SACE_1608 SACE_1611 SACE_1612 glnA2 SACE_1614
    832 24931311
    NC_009142.1 A4FQD5 not specified CGCACCCTGGAGGAAC +[1771308:1771323] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glnA2 (SACE_1613) , SACE_1614
    ... ... glnA2 SACE_1614
    832 24931311
    NC_009142.1 A4FQD5 not specified TCAACAGCTCAGAAAC +[1785103:1785118] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_1618 , SACE_1617 , glnE (SACE_1619) , SACE_1620
    ... ... SACE_1618 SACE_1617 glnE SACE_1620
    832 24931311
    NC_009142.1 A4FQD5 not specified TTAACGCCCGCGAAAC -[1793129:1793144] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_1623 , SACE_1624
    ... ... SACE_1623 SACE_1624
    832 24931311
    NC_009142.1 A4FQD5 not specified GACACGATGGCCGAAA +[1923821:1923836] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_1746 , gluB1 (SACE_1745) , SACE_1744 , gluD (SACE_1743) , SACE_1747 , SACE_1748 , SACE_1749
    ... ... SACE_1746 gluB1 SACE_1744 gluD SACE_1747 SACE_1748 SACE_1749
    832 24931311
    NC_009142.1 A4FQD5 not specified TCAACTTTTCCTCAAC +[3088631:3088646] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_2830 , aspA (SACE_2829) , SACE_2831
    ... ... SACE_2830 aspA SACE_2831
    832 24931311
    NC_009142.1 A4FQD5 not specified GCAACCCGCCGGTAAC +[3236573:3236588] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) racX (SACE_2953) , pfpI (SACE_2952) , SACE_2954 , cydA (SACE_2955) , cydB (SACE_2956) , SACE_2957
    ... ... racX pfpI SACE_2954 cydA cydB SACE_2957
    832 24931311
    NC_009142.1 A4FQD5 not specified GGCACAGACCCGAATC -[3404935:3404950] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_3095 , SACE_3096
    ... ... SACE_3095 SACE_3096
    832 24931311
    NC_009142.1 A4FQD5 not specified AGCACAATGGTGAAAT -[3840204:3840219] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ureA (SACE_3484) , SACE_3483 , SACE_3482 , ureC (SACE_3485) , SACE_3486 , SACE_3487 , SACE_3488
    ... ... ureA SACE_3483 SACE_3482 ureC SACE_3486 SACE_3487 SACE_3488
    832 24931311
    NC_009142.1 A4FQD5 not specified TTTGCATCTCGGTAAC +[4155499:4155514] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) narK (SACE_3799) , SACE_3798 , SACE_3800 , nirB (SACE_3801) , nirB (SACE_3802) , nirD (SACE_3803) , SACE_3804 , SACE_3805
    ... ... narK SACE_3798 SACE_3800 nirB nirB nirD SACE_3804 SACE_3805
    832 24931311
    NC_009142.1 A4FQD5 not specified GCTACCGTTAAGTAAC +[4392580:4392595] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gltB (SACE_3998) , SACE_3997
    ... ... gltB SACE_3997
    832 24931311
    NC_009142.1 A4FQD5 not specified TGAACAATGCCGCAAA -[4478534:4478549] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) narG (SACE_4070) , narH (SACE_4069) , narJ (SACE_4068) , narI (SACE_4067) , SACE_4066 , SACE_4065 , SACE_4071 , tnp (SACE_4072)
    ... ... narG narH narJ narI SACE_4066 SACE_4065 SACE_4071 tnp
    832 24931311
    NC_009142.1 A4FQD5 not specified GCAACATGTGGTTCAC +[5658042:5658057] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_5070 , racX (SACE_5069) , SACE_5068 , aspA (SACE_5071)
    ... ... SACE_5070 racX SACE_5068 aspA
    832 24931311
    NC_009142.1 A4FQD5 not specified CGCACAACGACGACAC +[5994575:5994590] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glnA4 (SACE_5355) , SACE_5356 , SACE_5354 , aldC (SACE_5353) , SACE_5352 , SACE_5351
    ... ... glnA4 SACE_5356 SACE_5354 aldC SACE_5352 SACE_5351
    832 24931311
    NC_009142.1 A4FQD5 not specified TTAACAGTCAAGATAC +[6455262:6455277] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gltB (SACE_5742) , SACE_5741 , SACE_5743 , SACE_5744 , SACE_5745
    ... ... gltB SACE_5741 SACE_5743 SACE_5744 SACE_5745
    832 24931311
    NC_009142.1 A4FQD5 not specified TTAGCGCGACGGAAAC +[6562195:6562210] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) nos (SACE_5845)
    ... ... nos
    832 24931311
    NC_009142.1 A4FQD5 not specified GCAACCGCGGCGAAAC +[6605109:6605124] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_5883 , SACE_5882 , SACE_5881 , SACE_5880
    ... ... SACE_5883 SACE_5882 SACE_5881 SACE_5880
    832 24931311
    NC_009142.1 A4FQD5 not specified TTATCGTTCCAGCAAC +[6713006:6713021] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) gdh (SACE_5979)
    ... ... gdh
    832 24931311
    NC_009142.1 A4FQD5 not specified TTCACGCTCCGGAAAC -[6799670:6799685] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) amt (SACE_6062) , glnB (SACE_6061)
    ... ... amt glnB
    832 24931311
    NC_009142.1 A4FQD5 not specified GACACATGCCCGTAAC -[7909867:7909882] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) glnR (SACE_7101) , SACE_7102 , SACE_7103 , trxA4 (SACE_7104)
    ... ... glnR SACE_7102 SACE_7103 trxA4
    832 24931311
    NC_009142.1 A4FQD5 not specified GTCACGGACCCGTAAA +[8061269:8061284] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) nos (SACE_7255)
    ... ... nos
    832 24931311
    NC_009142.1 A4FQD5 not specified GTAACGCGTTCGAAAC -[8094417:8094432] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SACE_7286 , SACE_7285 , SACE_7284 , SACE_7287
    ... ... SACE_7286 SACE_7285 SACE_7284 SACE_7287
    832 24931311

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TCAACAGCTCAGAAAC
    TTAACGCCCGCGAAAC
    TTAACAGTCAAGATAC
    TTCACGCTCCGGAAAC
    TTCACGCTCCGGAAAC
    TGAGCAACCGCGAAAC
    CAAACGCCTGAAAAAA
    TCAACTTTTCCTCAAC
    TTATCGTTCCAGCAAC
    CAAACGCCTGAAAAAA
    AGCAGCACTGGGAATC
    GCAACGCTGCGGAAAC
    GTTACATGCCGGACGC
    CGCACCCTGGAGGAAC
    TCAACAGCTCAGAAAC
    TTAACGCCCGCGAAAC
    GACACGATGGCCGAAA
    TCAACTTTTCCTCAAC
    GCAACCCGCCGGTAAC
    GGCACAGACCCGAATC
    AGCACAATGGTGAAAT
    TTTGCATCTCGGTAAC
    GCTACCGTTAAGTAAC
    TGAACAATGCCGCAAA
    GCAACATGTGGTTCAC
    CGCACAACGACGACAC
    TTAACAGTCAAGATAC
    TTAGCGCGACGGAAAC
    GCAACCGCGGCGAAAC
    TTATCGTTCCAGCAAC
    TTCACGCTCCGGAAAC
    GACACATGCCCGTAAC
    GTCACGGACCCGTAAA
    GTAACGCGTTCGAAAC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TCAACAGCTCAGAAAC
    TTAACGCCCGCGAAAC
    TTAACAGTCAAGATAC
    TTCACGCTCCGGAAAC
    TTCACGCTCCGGAAAC
    TGAGCAACCGCGAAAC
    CAAACGCCTGAAAAAA
    TCAACTTTTCCTCAAC
    TTATCGTTCCAGCAAC
    CAAACGCCTGAAAAAA
    AGCAGCACTGGGAATC
    GCAACGCTGCGGAAAC
    GTTACATGCCGGACGC
    CGCACCCTGGAGGAAC
    TCAACAGCTCAGAAAC
    TTAACGCCCGCGAAAC
    GACACGATGGCCGAAA
    TCAACTTTTCCTCAAC
    GCAACCCGCCGGTAAC
    GGCACAGACCCGAATC
    AGCACAATGGTGAAAT
    TTTGCATCTCGGTAAC
    GCTACCGTTAAGTAAC
    TGAACAATGCCGCAAA
    GCAACATGTGGTTCAC
    CGCACAACGACGACAC
    TTAACAGTCAAGATAC
    TTAGCGCGACGGAAAC
    GCAACCGCGGCGAAAC
    TTATCGTTCCAGCAAC
    TTCACGCTCCGGAAAC
    GACACATGCCCGTAAC
    TTTACGGGTCCGTGAC
    GTAACGCGTTCGAAAC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.