HdiR - UniProtKB: B9DUC0 regulon and binding site collection of Streptococcus uberis 0140J


Sites are listed as curated.

TTAGTAAAGTTATAACTTTACTAAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTAGTAAAGTTATAACTTTACTAAA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
TTAGTAAAGTTATAACTTTACTAAA Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details Visual sequence inspection (nan) SUB0899 , SUB0898 , SUB0897 , SUB0896 , SUB0900 , SUB0901 , SUB0903
... ... SUB0899 SUB0898 SUB0897 SUB0896 SUB0900 SUB0901 SUB0903
586 17513475

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

TTAGTAAAGTTATAACTTTACTAAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTAGTAAAGTTATAACTTTACTAAA
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.