LexA - UniProtKB: C1F978 regulon and binding site collection of Acidobacterium capsulatum ATCC 51196


Sites are listed as curated.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_012483.1 C1F978 dimer GCGAACAAAAACCGAACAG +[284801:284819] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) lexA (ACP_0231) , ACP_0232
    ... ... lexA ACP_0232
    91 16549674
    NC_012483.1 C1F978 dimer GCGAATATTAGGCGAAGAC +[1798096:1798114] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1517 , ACP_1518 , dnaE1 (ACP_1519) , ACP_1516
    ... ... ACP_1517 ACP_1518 dnaE1 ACP_1516
    91 16549674
    NC_012483.1 C1F978 dimer GTGAAGTGTATCGGATCAA +[1797987:1798005] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1517 , ACP_1518 , dnaE1 (ACP_1519) , ACP_1516
    ... ... ACP_1517 ACP_1518 dnaE1 ACP_1516
    91 16549674
    NC_012483.1 C1F978 dimer GAGAAGATAAGGCGAAGAC -[3703682:3703700] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_3199 , ACP_3198 , dnaE2 (ACP_3197) , ACP_3200
    ... ... ACP_3199 ACP_3198 dnaE2 ACP_3200
    91 16549674
    NC_012483.1 C1F978 dimer GGGAAGAAAAGGCGAATCA +[2148836:2148854] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1812 , ACP_1813
    ... ... ACP_1812 ACP_1813
    91 16549674

    LexA - UniProtKB: C1F978 regulon and binding site collection of Rhodobacter sphaeroides 2.4.1


    Sites are listed as curated.

    GGGAACGCGGGCAGAACAG
    CAGAACAGGCGGTGAACCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GGGAACGCGGGCAGAACAG
    CAGAACAGGCGGTGAACCA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_007493.1 C1F978 dimer GGGAACGCGGGCAGAACAG -[596729:596747] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
      ... ... lexA RSP_1998 moaC trpC trpD trpG
      93 16549674
      NC_007493.1 C1F978 dimer CAGAACAGGCGGTGAACCA -[596718:596736] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
      ... ... lexA RSP_1998 moaC trpC trpD trpG
      93 16549674

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      GCGAACAAAAACCGAACAG
      GCGAATATTAGGCGAAGAC
      GTGAAGTGTATCGGATCAA
      GAGAAGATAAGGCGAAGAC
      GGGAAGAAAAGGCGAATCA
      GGGAACGCGGGCAGAACAG
      CAGAACAGGCGGTGAACCA

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GCGAACAAAAACCGAACAG
      GCGAATATTAGGCGAAGAC
      GTGAAGTGTATCGGATCAA
      GAGAAGATAAGGCGAAGAC
      GGGAAGAAAAGGCGAATCA
      GGGAACGCGGGCAGAACAG
      CAGAACAGGCGGTGAACCA
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.