MogR - UniProtKB: P0DJO8 regulon and binding site collection of Listeria monocytogenes EGD-e


Sites are listed as curated.

ATTTTTTAAAAAAAT
TTTTTAATAAAAA
TTTTTTAAAAAAA
TTTTATTTTAAAA
TATAAAAACATAA
TTTTTATAAATAA
TTTTATTATAAAA
TTTTTTAAGAAAA
TTTTATTATAAAA
TTTTTTATTAAAA
TTTTACAATAAAA
TTTTATTTTAAAA
TTTTTTGAAAAAA
ATTAAATAGAAAA
TTTTTACACACAA
TTTTTTAAAAAAA
ATTTGGTGTAAAA
TTTTATTAAAAAA
TTTTTCTAAAAAA
TTTTTGCTACAAA
TTTTTAACAATAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ATTTTTTTAAAAAAT
TTTTTTATTAAAAAT
GATTTTTTAAAAAAA
TTTTTTAAAATAAAA
TTTATAAAAACATAA
TTTTTTATAAATAAA
TTTTTTATAATAAAA
TATTTTTTAAGAAAA
TTTTTTATAATAAAA
AGTTTTAATAAAAAA
TATTTTACAATAAAA
TTTTTTAAAATAAAA
ATTTTTTCAAAAAAT
TAATTAAATAGAAAA
ATTTTTACACACAAT
CATTTTTTAAAAAAA
AATTTTACACCAAAT
TATTTTTTAATAAAA
TATTTTTCTAAAAAA
TTTTTTGCTACAAAT
CTTATTGTTAAAAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003210.1 P0DJO8 dimer ATTTTTTAAAAAAAT +[724814:724828] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) - Experimental technique details X-ray crystallography (ECO:0005670) flaA (lmo0690)
    ... ... flaA
    1007 19446532
    NC_003210.1 P0DJO8 dimer TTTTTAATAAAAA +[724794:724806] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Site directed mutagenesis (ECO:0005667) flaA (lmo0690)
    ... ... flaA
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTTAAAAAAA +[724815:724827] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Site directed mutagenesis (ECO:0005667) flaA (lmo0690)
    ... ... flaA
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTATTTTAAAA +[724700:724712] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) flaA (lmo0690)
    ... ... flaA
    1009 16617375
    NC_003210.1 P0DJO8 dimer TATAAAAACATAA +[724721:724733] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) flaA (lmo0690)
    ... ... flaA
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTATAAATAA +[724763:724775] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) flaA (lmo0690)
    ... ... flaA
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTATTATAAAA +[725909:725921] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) cheY (lmo0691) , cheA (lmo0692) , lmo0693 , lmo0694 , lmo0695 , flgD (lmo0696) , flgE (lmo0697) , lmo0698 , fliM (lmo0699) , lmo0700 , lmo0701 , lmo0702 , lmo0703 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... cheY cheA lmo0693 lmo0694 lmo0695 flgD flgE lmo0698 fliM lmo0700 lmo0701 lmo0702 lmo0703 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTTAAGAAAA +[725930:725942] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) cheY (lmo0691) , cheA (lmo0692) , lmo0693 , lmo0694 , lmo0695 , flgD (lmo0696) , flgE (lmo0697) , lmo0698 , fliM (lmo0699) , lmo0700 , lmo0701 , lmo0702 , lmo0703 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... cheY cheA lmo0693 lmo0694 lmo0695 flgD flgE lmo0698 fliM lmo0700 lmo0701 lmo0702 lmo0703 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTATTATAAAA +[725909:725921] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) cheY (lmo0691) , cheA (lmo0692) , lmo0693 , lmo0694 , lmo0695 , flgD (lmo0696) , flgE (lmo0697) , lmo0698 , fliM (lmo0699) , lmo0700 , lmo0701 , lmo0702 , lmo0703 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... cheY cheA lmo0693 lmo0694 lmo0695 flgD flgE lmo0698 fliM lmo0700 lmo0701 lmo0702 lmo0703 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTTATTAAAA +[753392:753404] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0723 , lmo0724
    ... ... lmo0723 lmo0724
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTACAATAAAA +[753412:753424] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0723 , lmo0724
    ... ... lmo0723 lmo0724
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTATTTTAAAA +[737151:737163] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0703 , lmo0702 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... lmo0703 lmo0702 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTTGAAAAAA +[737170:737182] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0703 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... lmo0703 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer ATTAAATAGAAAA +[737212:737224] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0703 , lmo0704 , flgK (lmo0705) , flgL (lmo0706) , fliD (lmo0707) , lmo0708 , lmo0709 , flgB (lmo0710) , flgC (lmo0711) , fliE (lmo0712) , fliF (lmo0713) , fliG (lmo0714) , fliH (lmo0715) , fliI (lmo0716) , lmo0717 , lmo0718 , lmo0719 , lmo0720
    ... ... lmo0703 lmo0704 flgK flgL fliD lmo0708 lmo0709 flgB flgC fliE fliF fliG fliH fliI lmo0717 lmo0718 lmo0719 lmo0720
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTACACACAA +[710953:710965] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0675 , lmo0674 , lmo0673 , fliP (lmo0676) , fliQ (lmo0677) , fliR (lmo0678) , flhB (lmo0679) , flhA (lmo0680) , lmo0681 , flgG (lmo0682) , lmo0683 , lmo0684 , lmo0685 , motB (lmo0686) , lmo0687 , lmo0688 , lmo0689
    ... ... lmo0675 lmo0674 lmo0673 fliP fliQ fliR flhB flhA lmo0681 flgG lmo0683 lmo0684 lmo0685 motB lmo0687 lmo0688 lmo0689
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTTAAAAAAA +[710971:710983] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0675 , lmo0674 , lmo0673 , fliP (lmo0676) , fliQ (lmo0677) , fliR (lmo0678) , flhB (lmo0679) , flhA (lmo0680) , lmo0681 , flgG (lmo0682) , lmo0683 , lmo0684 , lmo0685 , motB (lmo0686) , lmo0687 , lmo0688 , lmo0689
    ... ... lmo0675 lmo0674 lmo0673 fliP fliQ fliR flhB flhA lmo0681 flgG lmo0683 lmo0684 lmo0685 motB lmo0687 lmo0688 lmo0689
    1009 16617375
    NC_003210.1 P0DJO8 dimer ATTTGGTGTAAAA +[711001:711013] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo0675 , lmo0674 , lmo0673 , fliP (lmo0676) , fliQ (lmo0677) , fliR (lmo0678) , flhB (lmo0679) , flhA (lmo0680) , lmo0681 , flgG (lmo0682) , lmo0683 , lmo0684 , lmo0685 , motB (lmo0686) , lmo0687 , lmo0688 , lmo0689
    ... ... lmo0675 lmo0674 lmo0673 fliP fliQ fliR flhB flhA lmo0681 flgG lmo0683 lmo0684 lmo0685 motB lmo0687 lmo0688 lmo0689
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTATTAAAAAA +[1763840:1763852] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo1699 , lmo1698 , lmo1700
    ... ... lmo1699 lmo1698 lmo1700
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTCTAAAAAA +[1763913:1763925] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lmo1699 , lmo1698 , lmo1700
    ... ... lmo1699 lmo1698 lmo1700
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTGCTACAAA +[1289099:1289111] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) lmo1266 , tig (lmo1267)
    ... ... lmo1266 tig
    1009 16617375
    NC_003210.1 P0DJO8 dimer TTTTTAACAATAA +[1289120:1289132] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) lmo1266 , tig (lmo1267)
    ... ... lmo1266 tig
    1009 16617375

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ATTTTTTAAAAAAAT
    TTTTTAATAAAAA
    TTTTTTAAAAAAA
    TTTTATTTTAAAA
    TATAAAAACATAA
    TTTTTATAAATAA
    TTTTATTATAAAA
    TTTTTTAAGAAAA
    TTTTATTATAAAA
    TTTTTTATTAAAA
    TTTTACAATAAAA
    TTTTATTTTAAAA
    TTTTTTGAAAAAA
    ATTAAATAGAAAA
    TTTTTACACACAA
    TTTTTTAAAAAAA
    ATTTGGTGTAAAA
    TTTTATTAAAAAA
    TTTTTCTAAAAAA
    TTTTTGCTACAAA
    TTTTTAACAATAA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATTTTTTTAAAAAAT
    TTTTTTATTAAAAAT
    GATTTTTTAAAAAAA
    TTTTTTAAAATAAAA
    TTTATAAAAACATAA
    TTTTTTATAAATAAA
    TTTTTTATAATAAAA
    TATTTTTTAAGAAAA
    TTTTTTATAATAAAA
    AGTTTTAATAAAAAA
    TATTTTACAATAAAA
    TTTTTTAAAATAAAA
    ATTTTTTCAAAAAAT
    TAATTAAATAGAAAA
    ATTTTTACACACAAT
    CATTTTTTAAAAAAA
    AATTTTACACCAAAT
    TATTTTTTAATAAAA
    TATTTTTCTAAAAAA
    TTTTTTGCTACAAAT
    CTTATTGTTAAAAAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.