LexA - UniProtKB: P44858 regulon and binding site collection of Haemophilus influenzae Rd KW20


Sites are listed as curated.

CTGTGTTTAAAAACAG
CTGTACATCAATACAG
CTGTAAATTAAGTCAG
CTGTATGAAATATCAG
CTGTACATCAATACAG
CTGGATGTTCGTCCAG
CTGTACATCAATACAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTGTGTTTAAAAACAG
CTGTATTGATGTACAG
CTGACTTAATTTACAG
CTGTATGAAATATCAG
CTGTATTGATGTACAG
CTGGATGTTCGTCCAG
CTGTATTGATGTACAG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_000907.1 P44858 dimer CTGTGTTTAAAAACAG +[810056:810071] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lexA (HI0749) , HI0748
    ... ... lexA HI0748
    72 16079351
    NC_000907.1 P44858 dimer CTGTACATCAATACAG -[622598:622613] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) recA (HI0600) , tfoX (HI0601)
    ... ... recA tfoX
    72 16079351
    NC_000907.1 P44858 dimer CTGTAAATTAAGTCAG -[77795:77810] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) recN (HI0070) , ppnK (HI0072)
    ... ... recN ppnK
    72 16079351
    NC_000907.1 P44858 dimer CTGTATGAAATATCAG +[1617266:1617281] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) HI1546 , HI1545
    ... ... HI1546 HI1545
    72 16079351
    NC_000907.1 P44858 dimer CTGTACATCAATACAG -[622598:622613] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Northern blot (ECO:0005653) recA (HI0600) , tfoX (HI0601)
    ... ... recA tfoX
    73 16079351
    NC_000907.1 P44858 dimer CTGGATGTTCGTCCAG -[345729:345744] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Northern blot (ECO:0005653) ruvA (HI0313) , ruvC (HI0314) , HI0315 , ruvB (HI0312)
    ... ... ruvA ruvC HI0315 ruvB
    73 16079351
    NC_000907.1 P44858 dimer CTGTACATCAATACAG -[622598:622613] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Primer Extension assay (ECO:0005657) recA (HI0600) , tfoX (HI0601)
    ... ... recA tfoX
    115 8226674

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTGTGTTTAAAAACAG
    CTGTACATCAATACAG
    CTGTAAATTAAGTCAG
    CTGTATGAAATATCAG
    CTGTACATCAATACAG
    CTGGATGTTCGTCCAG
    CTGTACATCAATACAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTGTGTTTAAAAACAG
    CTGTATTGATGTACAG
    CTGACTTAATTTACAG
    CTGTATGAAATATCAG
    CTGTATTGATGTACAG
    CTGGATGTTCGTCCAG
    CTGTATTGATGTACAG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.