Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium avium subsp. paratuberculosis K-10


Sites are listed as curated.

GCCGGTGGTCTGACCACCTGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCCGGTGGTCTGACCACCTGA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002944.2 P9WMG5 not specified GCCGGTGGTCTGACCACCTGA +[4550913:4550933] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) MAP4080c , MAP4081 , MAP4082 , MAP4083
    ... ... MAP4080c MAP4081 MAP4082 MAP4083
    18 18329386

    Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium smegmatis str. MC2 155


    Sites are listed as curated.

    ACCACTGGTAAGACCACTTGA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ACCACTGGTAAGACCACTTGA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_008596.1 P9WMG5 not specified ACCACTGGTAAGACCACTTGA +[3589417:3589437] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) MSMEG_3526 , MSMEG_3525 , MSMEG_3527 , MSMEG_3529 , MSMEG_3528
      ... ... MSMEG_3526 MSMEG_3525 MSMEG_3527 MSMEG_3529 MSMEG_3528
      21 18329386

      Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium sp. JLS


      Sites are listed as curated.

      GCTAACTGGTCAGACCACTTGAC

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GCTAACTGGTCAGACCACTTGAC

      For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

        Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
        NC_009077.1 P9WMG5 not specified GCTAACTGGTCAGACCACTTGAC +[2867328:2867350] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) Mjls_2756 , Mjls_2755 , Mjls_2757 , Mjls_2758 , Mjls_2759
        ... ... Mjls_2756 Mjls_2755 Mjls_2757 Mjls_2758 Mjls_2759
        25 18329386

        Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium sp. KMS


        Sites are listed as curated.

        GCTAACTGGTCAGACCACTTGAC

        Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

        GCTAACTGGTCAGACCACTTGAC

        For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

          Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
          NC_008705.1 P9WMG5 not specified GCTAACTGGTCAGACCACTTGAC +[2892900:2892922] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) Mkms_2770 , Mkms_2769 , Mkms_2771 , Mkms_2772 , Mkms_2773
          ... ... Mkms_2770 Mkms_2769 Mkms_2771 Mkms_2772 Mkms_2773
          19 18329386

          Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium tuberculosis H37Rv


          Sites are listed as curated.

          GGTGTCGGTCTGACCACTTGA

          Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

          GGTGTCGGTCTGACCACTTGA

          For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

            Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
            NC_018143.1 P9WMG5 not specified GGTGTCGGTCTGACCACTTGA +[684360:684380] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) RVBD_0585c , RVBD_0584 , RVBD_0586 , RVBD_0587 , RVBD_0588 , RVBD_0589 , RVBD_0590 , RVBD_0590A , RVBD_0591 , RVBD_0592 , RVBD_0593 , RVBD_0594
            ... ... RVBD_0585c RVBD_0584 RVBD_0586 RVBD_0587 RVBD_0588 RVBD_0589 RVBD_0590 RVBD_0590A RVBD_0591 RVBD_0592 RVBD_0593 RVBD_0594
            16 18329386

            Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Mycobacterium vanbaalenii PYR-1


            Sites are listed as curated.

            CACACTGGTCTGACCACTTGA

            Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

            CACACTGGTCTGACCACTTGA

            For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

              Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
              NC_008726.1 P9WMG5 not specified CACACTGGTCTGACCACTTGA +[3116631:3116651] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) Mvan_2941 , Mvan_2940 , Mvan_2939 , Mvan_2942 , Mvan_2943
              ... ... Mvan_2941 Mvan_2940 Mvan_2939 Mvan_2942 Mvan_2943
              23 18329386

              Mce2R - UniProtKB: P9WMG5 regulon and binding site collection of Nocardia farcinica IFM 10152


              Sites are listed as curated.

              ACGATTGGTCTTACCACTTGA

              Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

              ACGATTGGTCTTACCACTTGA

              For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

                Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
                NC_006361.1 P9WMG5 not specified ACGATTGGTCTTACCACTTGA -[153084:153104] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) nfa1630 , nfa1620 , nfa1640 , nfa1650 , nfa1660 , nfa1670 , nfa1680 , nfa1690
                ... ... nfa1630 nfa1620 nfa1640 nfa1650 nfa1660 nfa1670 nfa1680 nfa1690
                24 18329386

                All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


                Sites are listed as curated.

                GGTGTCGGTCTGACCACTTGA
                GCCGGTGGTCTGACCACCTGA
                GCTAACTGGTCAGACCACTTGAC
                ACCACTGGTAAGACCACTTGA
                CACACTGGTCTGACCACTTGA
                ACGATTGGTCTTACCACTTGA
                GCTAACTGGTCAGACCACTTGAC

                Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

                GGGTGTCGGTCTGACCACTTGAC
                CGCCGGTGGTCTGACCACCTGAC
                GCTAACTGGTCAGACCACTTGAC
                AACCACTGGTAAGACCACTTGAC
                GCACACTGGTCTGACCACTTGAC
                CACGATTGGTCTTACCACTTGAC
                GCTAACTGGTCAGACCACTTGAC
                Download data in FASTA format.
                Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
                Download raw data in TSV format. All reported sites are exported individually.
                Download data in Attribute-Relation File Format (ARFF).
                Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
                Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
                Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.