LexA - UniProtKB: Q1D406 regulon and binding site collection of Myxococcus xanthus DK 1622


Sites are listed as curated.

CTACACGTCTGTTCAGG
CTAAAAGCGCGTTCAGG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTACACGTCTGTTCAGG
CTAAAAGCGCGTTCAGG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008095.1 Q1D406 dimer CTACACGTCTGTTCAGG +[5506929:5506945] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (MXAN_4446) , MXAN_4445 , MXAN_4444 , MXAN_4443 , MXAN_4447 , MXAN_4448
    ... ... lexA MXAN_4445 MXAN_4444 MXAN_4443 MXAN_4447 MXAN_4448
    97 12864858
    NC_008095.1 Q1D406 dimer CTAAAAGCGCGTTCAGG +[1630382:1630398] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) recA (MXAN_1388) , MXAN_1387
    ... ... recA MXAN_1387
    98 12864858

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTACACGTCTGTTCAGG
    CTAAAAGCGCGTTCAGG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTACACGTCTGTTCAGG
    CTAAAAGCGCGTTCAGG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.