CRP - UniProtKB: Q5E2H1 regulon and binding site collection of Vibrio fischeri ES114


Sites are listed as curated.

AATTCGATCTGGGTCACATTT
ATTATGAAAAACTTCACACTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AATTCGATCTGGGTCACATTT
ATTATGAAAAACTTCACACTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_006841.2 Q5E2H1 not specified AATTCGATCTGGGTCACATTT -[1049467:1049487] Experimental technique details Fluorescence anisotropy (ECO:0005632) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) luxR (VF_A0925) , luxI (VF_A0924) , luxC (VF_A0923) , luxD (VF_A0922) , luxA (VF_A0921) , luxB (VF_A0920) , luxE (VF_A0919) , fre (VF_A0918)
    ... ... luxR luxI luxC luxD luxA luxB luxE fre
    843 23995643
    NC_006840.2 Q5E2H1 not specified ATTATGAAAAACTTCACACTT -[1144018:1144038] Experimental technique details Fluorescence anisotropy (ECO:0005632) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) ainS (VF_1037) , ainR (VF_1036) , rluB (VF_1038)
    ... ... ainS ainR rluB
    843 23995643

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AATTCGATCTGGGTCACATTT
    ATTATGAAAAACTTCACACTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AATTCGATCTGGGTCACATTT
    ATTATGAAAAACTTCACACTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.