IscR - UniProtKB: Q667Y0 regulon and binding site collection of Yersinia pseudotuberculosis IP 32953


Sites are listed as curated.

ATAGTTGAGTGAATTACTAGGTTAA
ATAGTTGACTAAAACACTCAAGAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ATAGTTGAGTGAATTACTAGGTTAA
ATAGTTGACTAAAACACTCAAGAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_006155.1 Q667Y0 not specified ATAGTTGAGTGAATTACTAGGTTAA -[3386233:3386257] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details RNA-Seq (ECO:0005664) YPTB2860 , iscS (YPTB2859) , nifU (YPTB2858)
    ... ... YPTB2860 iscS nifU
    973 24945271
    NC_006155.1 Q667Y0 not specified ATAGTTGACTAAAACACTCAAGAAT -[3386208:3386232] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details RNA-Seq (ECO:0005664) YPTB2860 , iscS (YPTB2859) , nifU (YPTB2858)
    ... ... YPTB2860 iscS nifU
    973 24945271

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ATAGTTGAGTGAATTACTAGGTTAA
    ATAGTTGACTAAAACACTCAAGAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATAGTTGAGTGAATTACTAGGTTAA
    ATAGTTGACTAAAACACTCAAGAAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.