CRP - UniProtKB: Q9KNW6 regulon and binding site collection of Vibrio cholerae O1 biovar El Tor str. N16961


Sites are listed as curated.

AAGAGTGATAAATATCAATTAT
AAACATGACACAGGTCACACTA
AAACGAGATTTACATCAACTTA
AAAGTTGAAATAGATCACCATA
TTTAGCGACGTAAGTCACAAAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAGAGTGATAAATATCAATTAT
TAGTGTGACCTGTGTCATGTTT
AAACGAGATTTACATCAACTTA
TATGGTGATCTATTTCAACTTT
TTTTGTGACTTACGTCGCTAAA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002506.1 Q9KNW6 not specified AAGAGTGATAAATATCAATTAT +[994527:994548] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) VCA1045 , VCA1046 , mtlR (VCA1047) , VCA1043 , VCA1042 , VCA1044 , VCA1048
    ... ... VCA1045 VCA1046 mtlR VCA1043 VCA1042 VCA1044 VCA1048
    990 24215877
    NC_002506.1 Q9KNW6 not specified AAACATGACACAGGTCACACTA +[994577:994598] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) VCA1045 , VCA1046 , mtlR (VCA1047) , VCA1044 , VCA1043 , VCA1042 , VCA1048
    ... ... VCA1045 VCA1046 mtlR VCA1044 VCA1043 VCA1042 VCA1048
    990 24215877
    NC_002506.1 Q9KNW6 not specified AAACGAGATTTACATCAACTTA +[994621:994642] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) VCA1045 , VCA1046 , mtlR (VCA1047) , VCA1044 , VCA1043 , VCA1042 , VCA1048
    ... ... VCA1045 VCA1046 mtlR VCA1044 VCA1043 VCA1042 VCA1048
    990 24215877
    NC_002506.1 Q9KNW6 not specified AAAGTTGAAATAGATCACCATA +[994694:994715] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) VCA1045 , VCA1046 , mtlR (VCA1047) , VCA1044 , VCA1043 , VCA1042 , VCA1048
    ... ... VCA1045 VCA1046 mtlR VCA1044 VCA1043 VCA1042 VCA1048
    990 24215877
    NC_002506.1 Q9KNW6 not specified TTTAGCGACGTAAGTCACAAAA +[994737:994758] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) VCA1045 , VCA1046 , mtlR (VCA1047) , VCA1044 , VCA1043 , VCA1042 , VCA1048
    ... ... VCA1045 VCA1046 mtlR VCA1044 VCA1043 VCA1042 VCA1048
    990 24215877

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AAGAGTGATAAATATCAATTAT
    AAACATGACACAGGTCACACTA
    AAACGAGATTTACATCAACTTA
    AAAGTTGAAATAGATCACCATA
    TTTAGCGACGTAAGTCACAAAA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AAGAGTGATAAATATCAATTAT
    TAGTGTGACCTGTGTCATGTTT
    AAACGAGATTTACATCAACTTA
    TATGGTGATCTATTTCAACTTT
    TTTTGTGACTTACGTCGCTAAA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.