Transcription Factor Binding Site Information

Yersinia pestis - NC_003143.1
PhoP [UniProtKB:A0A0B6P4W3, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CGTTTAGTTTTCGTTAAC - [2724046, 2724063] 18366809 Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - 341

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... YPO2422 pmrF YPO2420 YPO2419 arnT YPO2417 YPO2416 btuD btuE
Gene Locus tag Description
YPO2422 YPO2422 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
pmrF YPO2421 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
YPO2420 YPO2420 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
YPO2419 YPO2419 hypothetical protein
arnT YPO2418 4-amino-4-deoxy-L-arabinose transferase
YPO2417 YPO2417 hypothetical protein
YPO2416 YPO2416 hypothetical protein
btuD YPO2423 vitamin B12-transporter ATPase
btuE YPO2424 glutathione peroxidase