PhoP - UniProtKB: A0A0B6P4W3 regulon and binding site collection of Yersinia pestis CO92


Sites are listed as curated.

TGTTTAATTAGTTTATCC
TGTTGAATTTGTGTTTCA
TGTTCAATACCGATTAAT
CGTTATAGAACTGTTTAA
CGTTTAGTTTTCGTTAAC
AGCTTAATAATTGTTTAA
TATTTAAAGTAGGTTTTT
CATGAAATGCGCGTTTAT
TGTTGTAACAATTTAAAT
TGTGTTTTTAATGTTAAT
TGTTTAAGTATTGTTTAA
TAATTAAATGATATTGAA
TGTTCAATAACACATCAA
ATTTAACTGTATGGTTAT
TTTTTATATTTTTGTTGT
CGTTTAACGATAGGCAAA
TGTTTATAAATGGTTTTA
GGGTTTTTTACCGTTTAT
TGTCTATAGCCTGTTTAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCTGTTTAATTAGTTTATCCG
TTTGTTGAATTTGTGTTTCAT
TTGTTCAATACCGATTAATGT
CGTTATAGAACTGTTTAAGTT
CGTTTAGTTTTCGTTAACTTA
AGCTTAATAATTGTTTAAGGA
TATTTAAAGTAGGTTTTTATA
CATGAAATGCGCGTTTATCAT
AATGTTGTAACAATTTAAATG
TGTGTTTTTAATGTTAATTAC
TGTTTAAGTATTGTTTAAGAA
ATTTTCAATATCATTTAATTA
ATTGATGTGTTATTGAACAAG
TATAACCATACAGTTAAATGG
TACAACAAAAATATAAAAATA
TTTTTGCCTATCGTTAAACGA
TGTTTATAAATGGTTTTATAA
GGGTTTTTTACCGTTTATTTA
TGTCTATAGCCTGTTTATCCG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003143.1 A0A0B6P4W3 dimer TGTTTAATTAGTTTATCC +[1360867:1360884] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) katA (YPO1207) , YPO1208
    ... ... katA YPO1208
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTGAATTTGTGTTTCA +[3764191:3764208] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sodC (YPO3375) , eno (YPO3376)
    ... ... sodC eno
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTCAATACCGATTAAT +[4469699:4469716] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) uspB (YPO3969) , uspA (YPO3970)
    ... ... uspB uspA
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer CGTTATAGAACTGTTTAA -[1988453:1988470] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) pagP (YPO1744) , YPO1745 , cspC (YPO1746)
    ... ... pagP YPO1745 cspC
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer CGTTTAGTTTTCGTTAAC -[2724045:2724062] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) YPO2422 , pmrF (YPO2421) , YPO2420 , YPO2419 , arnT (YPO2418) , YPO2417 , YPO2416 , btuD (YPO2423) , btuE (YPO2424)
    ... ... YPO2422 pmrF YPO2420 YPO2419 arnT YPO2417 YPO2416 btuD btuE
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer AGCTTAATAATTGTTTAA +[11775:11792] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) YPO0010 , YPOr01
    ... ... YPO0010 YPOr01
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TATTTAAAGTAGGTTTTT -[122084:122101] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) metJ (YPO0114) , metB (YPO0115) , metL (YPO0116)
    ... ... metJ metB metL
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer CATGAAATGCGCGTTTAT +[1860920:1860937] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) phoP (YPO1634) , YPO1635 , phoQ (YPO1633) , purB (YPO1636)
    ... ... phoP YPO1635 phoQ purB
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTGTAACAATTTAAAT +[1860751:1860768] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) phoP (YPO1634) , phoQ (YPO1633) , YPO1635
    ... ... phoP phoQ YPO1635
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTGTTTTTAATGTTAAT -[2667165:2667182] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) slyA (YPO2374) , YPO2375
    ... ... slyA YPO2375
    341 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTTAAGTATTGTTTAA +[1886853:1886870] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) cheM (YPO1657) , YPO1659
    ... ... cheM YPO1659
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer TAATTAAATGATATTGAA -[4580078:4580095] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sodA (YPO4061) , fdhD (YPO4060)
    ... ... sodA fdhD
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTCAATAACACATCAA +[2679699:2679716] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sodB (YPO2386) , YPO2385
    ... ... sodB YPO2385
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer ATTTAACTGTATGGTTAT +[2679759:2679776] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sodB (YPO2386) , YPO2385
    ... ... sodB YPO2385
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer TTTTTATATTTTTGTTGT -[2679816:2679833] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sodB (YPO2386) , YPO2385
    ... ... sodB YPO2385
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer CGTTTAACGATAGGCAAA +[3555852:3555869] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) ahpC (YPO3194) , YPO3193
    ... ... ahpC YPO3193
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTTTATAAATGGTTTTA +[2446131:2446148] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) YPO2174 , YPO2173
    ... ... YPO2174 YPO2173
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer GGGTTTTTTACCGTTTAT +[2457108:2457125] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) oppA (YPO2182) , YPO2181
    ... ... oppA YPO2181
    342 18366809
    NC_003143.1 A0A0B6P4W3 dimer TGTCTATAGCCTGTTTAT +[587111:587128] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) tnp (YPO0541) , YPO0542
    ... ... tnp YPO0542
    342 18366809

    PhoP - UniProtKB: A0A0B6P4W3 regulon and binding site collection of Yersinia pestis KIM10+


    Sites are listed as curated.

    TCGTTATAGAACTGTTTAA
    TTGTTTAAGTATTGTTTAA
    CTGTTGACGTCCGGTTTAT
    GCGTTGATTAACCGTTTCA
    CGGTTAGCCAGTTGTTTAC
    CCGTTTAATATTGGTTAAA
    CCGTTTATTTTTTGTTAAG
    TTGTTGAGGATTGGTTGAT
    CCATTGCCAATGTCTTGAA
    CTGTTTACCCGCTGTTTAA
    TTGTTTATAATTTGTTTAA
    GCGTTTAGTTTTCGTTAAC
    TTGTTGATGTTTAGTTTAA
    TTGTTTATAAATGGTTTTA
    ATATTTACCTGCCGTTTAC
    ACGTTGAAAAAGCTTTTAT
    TTATTGATATTTTGTTTAG
    TGGTTGTGTTAGTGTTTAA
    TCATTTAGCTACTGTTAAG
    AATTTGAGGTTACGTTGAT
    AAGTTGATGCTTTGTTTCA
    CGGTTCACTCTTGTTTAAG
    ATATTTACTCTCTGTTTAT
    ATGTCTATAGCCTGTTTAT
    CCCTTGCTAATCTATTTAG
    CTGTTTATACAACGTTAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TCGTTATAGAACTGTTTAAG
    TTGTTTAAGTATTGTTTAAG
    CTGTTGACGTCCGGTTTATG
    GCGTTGATTAACCGTTTCAA
    CGGTTAGCCAGTTGTTTACC
    CCGTTTAATATTGGTTAAAG
    CCGTTTATTTTTTGTTAAGT
    TTGTTGAGGATTGGTTGATG
    CCATTGCCAATGTCTTGAAT
    CTGTTTACCCGCTGTTTAAC
    TTGTTTATAATTTGTTTAAT
    GCGTTTAGTTTTCGTTAACT
    TTGTTGATGTTTAGTTTAAA
    TTGTTTATAAATGGTTTTAT
    ATATTTACCTGCCGTTTACT
    ACGTTGAAAAAGCTTTTATT
    TTATTGATATTTTGTTTAGC
    TGGTTGTGTTAGTGTTTAAT
    TCATTTAGCTACTGTTAAGA
    AATTTGAGGTTACGTTGATG
    AAGTTGATGCTTTGTTTCAA
    GCGGTTCACTCTTGTTTAAG
    ATATTTACTCTCTGTTTATA
    ATGTCTATAGCCTGTTTATC
    CCCTTGCTAATCTATTTAGG
    CTGTTTATACAACGTTAATC

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_004088.1 A0A0B6P4W3 dimer TCGTTATAGAACTGTTTAA +[2826266:2826284] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagP (y2563) , y5003
      ... ... pagP y5003
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTGTTTAAGTATTGTTTAA +[2002176:2002194] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtC (y1820) , y1819
      ... ... 2000000 mgtC y1819
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CTGTTGACGTCCGGTTTAT +[1072445:1072463] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) nqrA (y0951) , y0950 , nqrB (y0952) , nqrC (y0953) , nqrD (y0954) , y0955 , nqrF (y0956) , y0957
      ... ... nqrA y0950 nqrB nqrC nqrD y0955 nqrF y0957
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer GCGTTGATTAACCGTTTCA +[39813:39831] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) psiE (y0025) , pgi (y0024) , lysC (y0023)
      ... ... psiE pgi lysC
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CGGTTAGCCAGTTGTTTAC -[39736:39754] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) psiE (y0025) , pgi (y0024) , lysC (y0023)
      ... ... psiE pgi lysC
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CCGTTTAATATTGGTTAAA -[2163086:2163104] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) slyB (y1962) , anmK (y1963)
      ... ... slyB anmK
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CCGTTTATTTTTTGTTAAG +[498937:498955] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y0447 , cstA (y0446)
      ... ... y0447 cstA
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTGTTGAGGATTGGTTGAT +[938748:938766] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y0838 , rpiB (y0837)
      ... ... y0838 rpiB
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CCATTGCCAATGTCTTGAA -[1448275:1448293] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y1306 , murQ (y1305)
      ... ... y1306 murQ
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CTGTTTACCCGCTGTTTAA -[1976789:1976807] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y1795 , y1796 , purB (y1797)
      ... ... y1795 y1796 purB
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTGTTTATAATTTGTTTAA +[2074002:2074020] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y1877 , y1876
      ... ... y1877 y1876
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer GCGTTTAGTTTTCGTTAAC +[2110193:2110211] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y1917 , y1918 , y1919 , y1920 , arnT (y1921) , y1922 , y1923 , btuD (y1916) , btuE (y1915)
      ... ... y1917 y1918 y1919 y1920 arnT y1922 y1923 btuD btuE
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTGTTGATGTTTAGTTTAA -[2346313:2346331] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y2124 , ivbL (y2125)
      ... ... y2124 ivbL
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTGTTTATAAATGGTTTTA -[2374055:2374073] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y2147 , hnr (y2148)
      ... ... y2147 hnr
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer ATATTTACCTGCCGTTTAC -[2874013:2874031] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y2608 , sbcB (y2610)
      ... ... y2608 sbcB
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer ACGTTGAAAAAGCTTTTAT -[2873947:2873965] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y2608 , y2607 , sbcB (y2610)
      ... ... y2608 y2607 sbcB
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TTATTGATATTTTGTTTAG +[3118806:3118824] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y2816 , y2815 , y2814 , y2813
      ... ... y2816 y2815 y2814 y2813
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TGGTTGTGTTAGTGTTTAA -[3615069:3615087] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y3284 , y3285
      ... ... y3284 y3285
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer TCATTTAGCTACTGTTAAG -[4231145:4231163] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y3808 , engB (y3809)
      ... ... y3808 engB
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer AATTTGAGGTTACGTTGAT +[4403812:4403830] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y3948 , y3947
      ... ... y3948 y3947
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer AAGTTGATGCTTTGTTTCA -[4568544:4568562] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y4116 , y4117 , trmE (y4118)
      ... ... y4116 y4117 trmE
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CGGTTCACTCTTGTTTAAG +[4579697:4579715] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y4125 , y4126
      ... ... y4125 y4126
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer ATATTTACTCTCTGTTTAT -[4580598:4580616] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) y4126 , phoU (y4127)
      ... ... y4126 phoU
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer ATGTCTATAGCCTGTTTAT -[4033409:4033427] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fruR (y3637) , y3638
      ... ... fruR y3638
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CCCTTGCTAATCTATTTAG -[4553887:4553905] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ibpA (y4102) , y4103 , y4104
      ... ... ibpA y4103 y4104
      14 20661307
      NC_004088.1 A0A0B6P4W3 dimer CTGTTTATACAACGTTAAT -[4553225:4553243] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ibpB (y4101) , ibpA (y4102)
      ... ... ibpB ibpA
      14 20661307

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TCGTTATAGAACTGTTTAA
      TTGTTTAAGTATTGTTTAA
      CTGTTGACGTCCGGTTTAT
      GCGTTGATTAACCGTTTCA
      CGGTTAGCCAGTTGTTTAC
      CCGTTTAATATTGGTTAAA
      CCGTTTATTTTTTGTTAAG
      TTGTTGAGGATTGGTTGAT
      CCATTGCCAATGTCTTGAA
      CTGTTTACCCGCTGTTTAA
      TTGTTTATAATTTGTTTAA
      GCGTTTAGTTTTCGTTAAC
      TTGTTGATGTTTAGTTTAA
      TTGTTTATAAATGGTTTTA
      ATATTTACCTGCCGTTTAC
      ACGTTGAAAAAGCTTTTAT
      TTATTGATATTTTGTTTAG
      TGGTTGTGTTAGTGTTTAA
      TCATTTAGCTACTGTTAAG
      AATTTGAGGTTACGTTGAT
      AAGTTGATGCTTTGTTTCA
      CGGTTCACTCTTGTTTAAG
      ATATTTACTCTCTGTTTAT
      ATGTCTATAGCCTGTTTAT
      CCCTTGCTAATCTATTTAG
      CTGTTTATACAACGTTAAT
      TGTTTAATTAGTTTATCC
      TGTTGAATTTGTGTTTCA
      TGTTCAATACCGATTAAT
      CGTTATAGAACTGTTTAA
      CGTTTAGTTTTCGTTAAC
      AGCTTAATAATTGTTTAA
      TATTTAAAGTAGGTTTTT
      CATGAAATGCGCGTTTAT
      TGTTGTAACAATTTAAAT
      TGTGTTTTTAATGTTAAT
      TGTTTAAGTATTGTTTAA
      TAATTAAATGATATTGAA
      TGTTCAATAACACATCAA
      ATTTAACTGTATGGTTAT
      TTTTTATATTTTTGTTGT
      CGTTTAACGATAGGCAAA
      TGTTTATAAATGGTTTTA
      GGGTTTTTTACCGTTTAT
      TGTCTATAGCCTGTTTAT

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TCGTTATAGAACTGTTTAAGT
      TTGTTTAAGTATTGTTTAAGA
      CTGTTGACGTCCGGTTTATGG
      GCGTTGATTAACCGTTTCAAG
      CGGTTAGCCAGTTGTTTACCC
      CCGTTTAATATTGGTTAAAGC
      CCGTTTATTTTTTGTTAAGTT
      TTGTTGAGGATTGGTTGATGA
      CCATTGCCAATGTCTTGAATG
      CTGTTTACCCGCTGTTTAACG
      TTGTTTATAATTTGTTTAATT
      GCGTTTAGTTTTCGTTAACTT
      TTGTTGATGTTTAGTTTAAAA
      TTGTTTATAAATGGTTTTATA
      ATATTTACCTGCCGTTTACTC
      ACGTTGAAAAAGCTTTTATTA
      TTATTGATATTTTGTTTAGCT
      TGGTTGTGTTAGTGTTTAATT
      TCATTTAGCTACTGTTAAGAA
      AATTTGAGGTTACGTTGATGT
      AAGTTGATGCTTTGTTTCAAT
      CGGTTCACTCTTGTTTAAGGA
      ATATTTACTCTCTGTTTATAC
      ATGTCTATAGCCTGTTTATCC
      CCCTTGCTAATCTATTTAGGA
      CTGTTTATACAACGTTAATCC
      CTGTTTAATTAGTTTATCCGT
      TTGTTGAATTTGTGTTTCATT
      TTGTTCAATACCGATTAATGT
      TCGTTATAGAACTGTTTAAGT
      GCGTTTAGTTTTCGTTAACTT
      TAGCTTAATAATTGTTTAAGG
      GTATTTAAAGTAGGTTTTTAT
      TCATGAAATGCGCGTTTATCA
      ACATTTAAATTGTTACAACAT
      TTGTGTTTTTAATGTTAATTA
      TTGTTTAAGTATTGTTTAAGA
      ATTTTCAATATCATTTAATTA
      TTGTTCAATAACACATCAATG
      CATTTAACTGTATGGTTATAT
      ATTTTTATATTTTTGTTGTAA
      TCGTTTAACGATAGGCAAAAA
      TTGTTTATAAATGGTTTTATA
      TGGGTTTTTTACCGTTTATTT
      ATGTCTATAGCCTGTTTATCC
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.