Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000076e0
Genome
Mycobacterium smegmatis - NC_008596.1
TF
LexA [UniProtKB:A0QVY5, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GAACAGGTGTTC + [2792244, 2792255] 9427395 Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details xylE reporter assay - 385

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... recA MSMEG_2737 MSMEG_2736 dapF miaA MSMEG_2733 MSMEG_2732 MSMEG_2731 MSMEG_2730 miaB MSMEG_2728 MSMEG_2727 MSMEG_2726 MSMEG_2725 recX MSMEG_2704 hypE gmhA MSMEG_2707 MSMEG_2709 MSMEG_2708 MSMEG_2710 hypF hypC MSMEG_2713 MSMEG_2714 MSMEG_2715 MSMEG_2716 MSMEG_2717 MSMEG_2718 MSMEG_2719 MSMEG_2720 hypB hypA MSMEG_2738
Gene Locus tag Description
recA MSMEG_2723 recombinase A
MSMEG_2737 MSMEG_2737 PPE family protein
MSMEG_2736 MSMEG_2736 GTP-binding protein
dapF MSMEG_2735 diaminopimelate epimerase
miaA MSMEG_2734 tRNA delta(2)-isopentenylpyrophosphate transferase
MSMEG_2733 MSMEG_2733 hypothetical protein
MSMEG_2732 MSMEG_2732 hypothetical protein
MSMEG_2731 MSMEG_2731 DNA repair ATPase
MSMEG_2730 MSMEG_2730 pseudo
miaB MSMEG_2729 (dimethylallyl)adenosine tRNA methylthiotransferase
MSMEG_2728 MSMEG_2728 glutamate transport ATP-binding protein GluA
MSMEG_2727 MSMEG_2727 glutamate binding protein
MSMEG_2726 MSMEG_2726 glutamate permease
MSMEG_2725 MSMEG_2725 glutamate transporter permease GluD
recX MSMEG_2724 recombination regulator RecX
MSMEG_2704 MSMEG_2704 pseudo
hypE MSMEG_2705 hydrogenase expression/formation protein HypE
gmhA MSMEG_2706 phosphoheptose isomerase
MSMEG_2707 MSMEG_2707 hypothetical protein
MSMEG_2709 MSMEG_2709 hypothetical protein
MSMEG_2708 MSMEG_2708 hypothetical protein
MSMEG_2710 MSMEG_2710 hypothetical protein
hypF MSMEG_2711 [NiFe] hydrogenase maturation protein HypF
hypC MSMEG_2712 hydrogenase assembly chaperone HypC/HupF
MSMEG_2713 MSMEG_2713 peptidase M52, hydrogen uptake protein
MSMEG_2714 MSMEG_2714 hypothetical protein
MSMEG_2715 MSMEG_2715 hypothetical protein
MSMEG_2716 MSMEG_2716 hypothetical protein
MSMEG_2717 MSMEG_2717 hypothetical protein
MSMEG_2718 MSMEG_2718 (Fe-S)-binding protein
MSMEG_2719 MSMEG_2719 hydrogen:quinone oxidoreductase
MSMEG_2720 MSMEG_2720 NADH ubiquinone oxidoreductase, 20 kDa subunit
hypB MSMEG_2721 hydrogenase nickel incorporation protein HypB
hypA MSMEG_2722 hydrogenase nickel incorporation protein HypA
MSMEG_2738 MSMEG_2738 biotin sulfoxide reductase