LexA - UniProtKB: A0QVY5 regulon and binding site collection of Mycobacterium leprae TN


Sites are listed as curated.

GAACACATGTTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GAACACATGTTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002677.1 A0QVY5 dimer GAACACATGTTT -[1175762:1175773] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) ML1004 , ML1001 , ML1002 , lexA (ML1003)
    ... ... ML1004 ML1001 ML1002 lexA
    386 9427395

    LexA - UniProtKB: A0QVY5 regulon and binding site collection of Mycobacterium smegmatis str. MC2 155


    Sites are listed as curated.

    GAACAGGTGTTC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GAACAGGTGTTC

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_008596.1 A0QVY5 dimer GAACAGGTGTTC +[2792243:2792254] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details xylE reporter assay recA (MSMEG_2723) , MSMEG_2737 , MSMEG_2736 , dapF (MSMEG_2735) , miaA (MSMEG_2734) , MSMEG_2733 , MSMEG_2732 , MSMEG_2731 , MSMEG_2730 , miaB (MSMEG_2729) , MSMEG_2728 , MSMEG_2727 , MSMEG_2726 , MSMEG_2725 , recX (MSMEG_2724) , MSMEG_2704 , hypE (MSMEG_2705) , gmhA (MSMEG_2706) , MSMEG_2707 , MSMEG_2709 , MSMEG_2708 , MSMEG_2710 , hypF (MSMEG_2711) , hypC (MSMEG_2712) , MSMEG_2713 , MSMEG_2714 , MSMEG_2715 , MSMEG_2716 , MSMEG_2717 , MSMEG_2718 , MSMEG_2719 , MSMEG_2720 , hypB (MSMEG_2721) , hypA (MSMEG_2722) , MSMEG_2738
      ... ... recA MSMEG_2737 MSMEG_2736 dapF miaA MSMEG_2733 MSMEG_2732 MSMEG_2731 MSMEG_2730 miaB MSMEG_2728 MSMEG_2727 MSMEG_2726 MSMEG_2725 recX MSMEG_2704 hypE gmhA MSMEG_2707 MSMEG_2709 MSMEG_2708 MSMEG_2710 hypF hypC MSMEG_2713 MSMEG_2714 MSMEG_2715 MSMEG_2716 MSMEG_2717 MSMEG_2718 MSMEG_2719 MSMEG_2720 hypB hypA MSMEG_2738
      385 9427395

      LexA - UniProtKB: A0QVY5 regulon and binding site collection of Mycobacterium tuberculosis H37Rv


      Sites are listed as curated.

      TCGAACAGGTGTTCGG

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TCGAACAGGTGTTCGG

      For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

        Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
        NC_000962.3 A0QVY5 dimer TCGAACAGGTGTTCGG -[3051531:3051546] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) recA (Rv2737c) , ephG (Rv2740) , Rv2739c , Rv2738c , Rv2737A , Rv2734 , Rv2735c , recX (Rv2736c)
        ... ... recA ephG Rv2739c Rv2738c Rv2737A Rv2734 Rv2735c recX
        388 12029045

        All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


        Sites are listed as curated.

        GAACAGGTGTTC
        GAACACATGTTT
        TCGAACAGGTGTTCGG

        Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

        TCGAACAGGTGTTCGT
        TCAAACATGTGTTCGA
        TCGAACAGGTGTTCGG
        Download data in FASTA format.
        Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
        Download raw data in TSV format. All reported sites are exported individually.
        Download data in Attribute-Relation File Format (ARFF).
        Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
        Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
        Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.