Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00009580
Genome
Pseudomonas aeruginosa - NC_002516.2
TF
AlgR [UniProtKB:P26275, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CCGTGGGCC - [2414775, 2414783] 15317771 Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details S1 nuclease protection (ECO:0005666) - 460

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... hcnC hcnB hcnA PA2196 PA2197 PA2198 PA2199 PA2200 PA2201 PA2202 PA2203 PA2204
Gene Locus tag Description
hcnC PA2195 hydrogen cyanide synthase HcnC
hcnB PA2194 hydrogen cyanide synthase HcnB
hcnA PA2193 hydrogen cyanide synthase HcnA
PA2196 PA2196 transcriptional regulator
PA2197 PA2197 hypothetical protein
PA2198 PA2198 hypothetical protein
PA2199 PA2199 dehydrogenase
PA2200 PA2200 hypothetical protein
PA2201 PA2201 hypothetical protein
PA2202 PA2202 amino acid permease
PA2203 PA2203 amino acid permease
PA2204 PA2204 ABC transporter