Zur - UniProtKB: Q9JZ70 regulon and binding site collection of Neisseria meningitidis MC58


Sites are listed as curated.

TGTTATAATATAACA
TGTTATAACATAACA
TGTTATATAATAACA
TGTTATGTTATAACA
TGTTTTACCATAACA
TATAATGGATTAACA
CGTTATACAGTATCA
CGATATGTCAAACCA
AGGTCTATAATGCCA
TGTAATCCATTTGCA
ATACACTTTTTAACA
TGTTACGCTATATCA
TATAGTGGATTAACA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTTATAATATAACA
TGTTATAACATAACA
TGTTATTATATAACA
TGTTATAACATAACA
TGTTTTACCATAACA
TGTTAATCCATTATA
CGTTATACAGTATCA
TGGTTTGACATATCG
TGGCATTATAGACCT
TGCAAATGGATTACA
TGTTAAAAAGTGTAT
TGATATAGCGTAACA
TGTTAATCCACTATA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003112.2 Q9JZ70 not specified TGTTATAATATAACA -[571724:571738] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) adhP (NMB0546) , NMB0547
    ... ... adhP NMB0547
    322 23043002
    NC_003112.2 Q9JZ70 not specified TGTTATAACATAACA +[1525243:1525257] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB1475 , NMB1474
    ... ... NMB1475 NMB1474
    321 23043002
    NC_003112.2 Q9JZ70 not specified TGTTATATAATAACA -[985569:985583] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0964 , NMB0965
    ... ... NMB0964 NMB0965
    321 23043002
    NC_003112.2 Q9JZ70 not specified TGTTATGTTATAACA -[956087:956101] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) rpmE2 (NMB0942) , rpmJ (NMB0941) , metF (NMB0943)
    ... ... rpmE2 rpmJ metF
    319 23043002
    NC_003112.2 Q9JZ70 not specified TGTTTTACCATAACA -[619243:619257] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0586 , NMB0587 , NMB0588
    ... ... NMB0586 NMB0587 NMB0588
    319 23043002
    NC_003112.2 Q9JZ70 not specified TATAATGGATTAACA -[329439:329453] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0317 , farA (NMB0318) , farB (NMB0319)
    ... ... NMB0317 farA farB
    319 23043002
    NC_003112.2 Q9JZ70 not specified CGTTATACAGTATCA -[621073:621087] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0588 , NMB0587 , rplS (NMB0589) , trmD (NMB0590) , rimM (NMB0591) , rpsP (NMB0592) , NMB0593
    ... ... NMB0588 NMB0587 rplS trmD rimM rpsP NMB0593
    319 23043002
    NC_003112.2 Q9JZ70 not specified CGATATGTCAAACCA +[546268:546282] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0525 , rbn (NMB0524) , NMB0523 , NMB0526 , NMB0527
    ... ... NMB0525 rbn NMB0523 NMB0526 NMB0527
    319 23043002
    NC_003112.2 Q9JZ70 not specified AGGTCTATAATGCCA +[841960:841974] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0817 , NMB0816 , NMB0818
    ... ... NMB0817 NMB0816 NMB0818
    319 23043002
    NC_003112.2 Q9JZ70 not specified TGTAATCCATTTGCA +[843457:843471] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0820 , NMB0819
    ... ... NMB0820 NMB0819
    319 23043002
    NC_003112.2 Q9JZ70 not specified ATACACTTTTTAACA +[842780:842794] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0819 , NMB0818 , NMB0817 , NMB0816
    ... ... NMB0819 NMB0818 NMB0817 NMB0816
    319 23043002
    NC_003112.2 Q9JZ70 not specified TGTTACGCTATATCA +[1543318:1543332] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB1497 , NMB1496 , lysC (NMB1498)
    ... ... NMB1497 NMB1496 lysC
    319 23043002
    NC_003112.2 Q9JZ70 not specified TATAGTGGATTAACA +[605230:605244] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) NMB0577 , hemA (NMB0576)
    ... ... NMB0577 hemA
    323 23043002

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGTTATAATATAACA
    TGTTATAACATAACA
    TGTTATATAATAACA
    TGTTATGTTATAACA
    TGTTTTACCATAACA
    TATAATGGATTAACA
    CGTTATACAGTATCA
    CGATATGTCAAACCA
    AGGTCTATAATGCCA
    TGTAATCCATTTGCA
    ATACACTTTTTAACA
    TGTTACGCTATATCA
    TATAGTGGATTAACA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGTTATAATATAACA
    TGTTATAACATAACA
    TGTTATTATATAACA
    TGTTATAACATAACA
    TGTTTTACCATAACA
    TGTTAATCCATTATA
    CGTTATACAGTATCA
    TGGTTTGACATATCG
    TGGCATTATAGACCT
    TGCAAATGGATTACA
    TGTTAAAAAGTGTAT
    TGATATAGCGTAACA
    TGTTAATCCACTATA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.