Fur - UniProtKB: Q8Y5U9 regulon and binding site collection of Listeria monocytogenes 10403S


Sites are listed as curated.

GATAATGATGATAATTTAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GATAATGATGATAATTTAG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_017544.1 Q8Y5U9 dimer GATAATGATGATAATTTAG -[1987746:1987764] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) LMRG_01103
    ... ... LMRG_01103
    672 17379719

    Fur - UniProtKB: Q8Y5U9 regulon and binding site collection of Listeria monocytogenes EGD-e


    Sites are listed as curated.

    GACAATGATAATCATTATC
    GAAAATAATTCTCAATTAG
    GATAATCATTATCAATTAA
    GATAATGATTATCATGTTC
    GATAATAATTCTCAGTTAG
    GATAATCATTCTCAATGGT
    GATAATTATTATCACTTAA
    GATAATGATGATAATTTAG
    GACAATGAGAATCATTATC
    GATAATCATTTTCAGTTAG
    GATAATCATTATAAAATAG
    GATAATGAAAATCATTTTC
    GATAACGTTTATCATTTAA
    GATAATCATTTTCAATTAG
    GATAATGATTATCATTTTC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GACAATGATAATCATTATC
    CTAATTGAGAATTATTTTC
    TTAATTGATAATGATTATC
    GAACATGATAATCATTATC
    CTAACTGAGAATTATTATC
    ACCATTGAGAATGATTATC
    TTAAGTGATAATAATTATC
    CTAAATTATCATCATTATC
    GACAATGAGAATCATTATC
    CTAACTGAAAATGATTATC
    CTATTTTATAATGATTATC
    GATAATGAAAATCATTTTC
    TTAAATGATAAACGTTATC
    CTAATTGAAAATGATTATC
    GAAAATGATAATCATTATC

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_003210.1 Q8Y5U9 not specified GACAATGATAATCATTATC -[2274857:2274875] Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) lmo2180 , lmo2181 , lmo2182 , lmo2183 , lmo2184 , lmo2185 , lmo2186
      ... ... lmo2180 lmo2181 lmo2182 lmo2183 lmo2184 lmo2185 lmo2186
      1104 15661014
      NC_003210.1 Q8Y5U9 not specified GAAAATAATTCTCAATTAG -[2501219:2501237] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo2433 , lmo2432 , lmo2427 , lmo2428 , lmo2429 , lmo2430 , lmo2431
      ... ... lmo2433 lmo2432 lmo2427 lmo2428 lmo2429 lmo2430 lmo2431
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATCATTATCAATTAA -[2274851:2274869] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lmo2180 , lmo2181 , lmo2182 , lmo2183 , lmo2184 , lmo2185 , lmo2186
      ... ... lmo2180 lmo2181 lmo2182 lmo2183 lmo2184 lmo2185 lmo2186
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATGATTATCATGTTC +[2184068:2184086] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo2105 , lmo2104 , eutD (lmo2103)
      ... ... lmo2105 lmo2104 eutD
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATAATTCTCAGTTAG +[2034547:2034565] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fhuC (lmo1960) , fhuG (lmo1957) , fhuB (lmo1958) , lmo1959 , lmo1961
      ... ... fhuC fhuG fhuB lmo1959 lmo1961
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATCATTCTCAATGGT -[2034645:2034663] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fhuC (lmo1960) , fhuG (lmo1957) , fhuB (lmo1958) , lmo1959 , lmo1961
      ... ... fhuC fhuG fhuB lmo1959 lmo1961
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATTATTATCACTTAA -[2033522:2033540] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fhuG (lmo1957) , fhuB (lmo1958)
      ... ... fhuG fhuB
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATGATGATAATTTAG -[2031234:2031252] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fur (lmo1956)
      ... ... fur
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GACAATGAGAATCATTATC +[1164067:1164085] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo1131 , lmo1132 , lmo1128 , lmo1129 , lmo1130
      ... ... lmo1131 lmo1132 lmo1128 lmo1129 lmo1130
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATCATTTTCAGTTAG +[1038281:1038299] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo1007 , lmo1006
      ... ... lmo1007 lmo1006
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATCATTATAAAATAG +[979026:979044] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) fri (lmo0943) , lmo0937 , lmo0938 , lmo0939 , lmo0940 , lmo0941 , lmo0942
      ... ... fri lmo0937 lmo0938 lmo0939 lmo0940 lmo0941 lmo0942
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATGAAAATCATTTTC -[581059:581077] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo0541
      ... ... lmo0541
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAACGTTTATCATTTAA +[520928:520946] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lmo0485 , lmo0487 , rpmF (lmo0486)
      ... ... lmo0485 lmo0487 rpmF
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATCATTTTCAATTAG +[391565:391583] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo0367 , lmo0366 , lmo0365 , lmo0370 , lmo0369 , lmo0368
      ... ... lmo0367 lmo0366 lmo0365 lmo0370 lmo0369 lmo0368
      1105 19933349
      NC_003210.1 Q8Y5U9 not specified GATAATGATTATCATTTTC -[389741:389759] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) lmo0362 , lmo0361
      ... ... lmo0362 lmo0361
      1105 19933349

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      GATAATGATGATAATTTAG
      GACAATGATAATCATTATC
      GAAAATAATTCTCAATTAG
      GATAATCATTATCAATTAA
      GATAATGATTATCATGTTC
      GATAATAATTCTCAGTTAG
      GATAATCATTCTCAATGGT
      GATAATTATTATCACTTAA
      GATAATGATGATAATTTAG
      GACAATGAGAATCATTATC
      GATAATCATTTTCAGTTAG
      GATAATCATTATAAAATAG
      GATAATGAAAATCATTTTC
      GATAACGTTTATCATTTAA
      GATAATCATTTTCAATTAG
      GATAATGATTATCATTTTC

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GATAATGATGATAATTTAG
      GATAATGATTATCATTGTC
      GAAAATAATTCTCAATTAG
      GATAATCATTATCAATTAA
      GATAATGATTATCATGTTC
      GATAATAATTCTCAGTTAG
      GATAATCATTCTCAATGGT
      GATAATTATTATCACTTAA
      GATAATGATGATAATTTAG
      GATAATGATTCTCATTGTC
      GATAATCATTTTCAGTTAG
      GATAATCATTATAAAATAG
      GAAAATGATTTTCATTATC
      GATAACGTTTATCATTTAA
      GATAATCATTTTCAATTAG
      GATAATGATTATCATTTTC
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.