LexA - UniProtKB: P37452 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

CTGGATAAAAACACAG
CTGTATGGATAACCAG
CTGTATAAATAACCAG
CTGTATGAATGTACAG
CTGTCTACTTATACAG
CTGGATAAATTTTCAG
CTGGATAAATTTTCAG
CTGTATCCATATACAG
CTGTATATTCGTACAG
CTGTATTTACATACAG
CACTGGATAAAAACACAGAG
CACTGTATATAATCCCAGTC
CTGTACGAATATACAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CACTGGATAAAAACACAGAG
TACTGTATGGATAACCAGTC
TACTGTATAAATAACCAGAC
TACTGTATGAATGTACAGTA
AACTGTATAAGTAGACAGTA
AGCTGGATAAATTTTCAGTG
AGCTGGATAAATTTTCAGTG
TACTGTATCCATATACAGTA
GGCTGTACGAATATACAGTT
TACTGTATGTAAATACAGTA
CACTGGATAAAAACACAGAG
CACTGTATATAATCCCAGTC
GGCTGTACGAATATACAGTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 P37452 dimer CTGGATAAAAACACAG +[3367877:3367892] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3008 , lexA (PA3007) , psrA (PA3006) , PA3009
    ... ... PA3008 lexA psrA PA3009
    64 17015649
    NC_002516.2 P37452 dimer CTGTATGGATAACCAG +[3819949:3819964] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3414 , PA3413 , PA3412
    ... ... PA3414 PA3413 PA3412
    64 17015649
    NC_002516.2 P37452 dimer CTGTATAAATAACCAG +[5349888:5349903] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) recN (PA4763) , grpE (PA4762)
    ... ... recN grpE
    64 17015649
    NC_002516.2 P37452 dimer CTGTATGAATGTACAG -[2516349:2516364] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2288 , PA2283 , PA2284 , PA2285 , PA2286 , PA2287 , PA2289 , PA2282
    ... ... PA2288 PA2283 PA2284 PA2285 PA2286 PA2287 PA2289 PA2282
    64 17015649
    NC_002516.2 P37452 dimer CTGTCTACTTATACAG -[4052647:4052662] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3616 , recA (PA3617) , PA3618 , PA3615
    ... ... PA3616 recA PA3618 PA3615
    64 17015649
    NC_002516.2 P37452 dimer CTGGATAAATTTTCAG -[1129381:1129396] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA1045 , PA1044 , PA1042 , PA1043
    ... ... PA1045 PA1044 PA1042 PA1043
    64 17015649
    NC_002516.2 P37452 dimer CTGGATAAATTTTCAG -[1129381:1129396] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA1044 , PA1045 , PA1042 , PA1043
    ... ... PA1044 PA1045 PA1042 PA1043
    64 17015649
    NC_002516.2 P37452 dimer CTGTATCCATATACAG +[81079:81094] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0069 , prlC (PA0067) , PA0068
    ... ... PA0069 prlC PA0068
    64 17015649
    NC_002516.2 P37452 dimer CTGTATATTCGTACAG -[1007600:1007615] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0922 , PA0922.1 , PA0921
    ... ... PA0922 PA0922.1 PA0921
    64 17015649
    NC_002516.2 P37452 dimer CTGTATTTACATACAG -[732789:732804] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0669 , PA0670 , PA0671 , hemO (PA0672)
    ... ... PA0669 PA0670 PA0671 hemO
    64 17015649
    NC_002516.2 P37452 dimer CACTGGATAAAAACACAGAG +[3367875:3367894] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lexA (PA3007) , PA3008 , psrA (PA3006) , PA3009
    ... ... lexA PA3008 psrA PA3009
    129 15458417
    NC_002516.2 P37452 dimer CACTGTATATAATCCCAGTC +[3367856:3367875] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lexA (PA3007) , PA3008 , psrA (PA3006) , PA3009
    ... ... lexA PA3008 psrA PA3009
    129 15458417
    NC_002516.2 P37452 not specified CTGTACGAATATACAG +[1007600:1007615] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) PA0922
    ... ... PA0922
    800 17041045

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTGGATAAAAACACAG
    CTGTATGGATAACCAG
    CTGTATAAATAACCAG
    CTGTATGAATGTACAG
    CTGTCTACTTATACAG
    CTGGATAAATTTTCAG
    CTGGATAAATTTTCAG
    CTGTATCCATATACAG
    CTGTATATTCGTACAG
    CTGTATTTACATACAG
    CACTGGATAAAAACACAGAG
    CACTGTATATAATCCCAGTC
    CTGTACGAATATACAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CACTGGATAAAAACACAGAG
    TACTGTATGGATAACCAGTC
    TACTGTATAAATAACCAGAC
    TACTGTATGAATGTACAGTA
    AACTGTATAAGTAGACAGTA
    AGCTGGATAAATTTTCAGTG
    AGCTGGATAAATTTTCAGTG
    TACTGTATCCATATACAGTA
    GGCTGTACGAATATACAGTT
    TACTGTATGTAAATACAGTA
    CACTGGATAAAAACACAGAG
    CACTGTATATAATCCCAGTC
    GGCTGTACGAATATACAGTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.