RpoN - UniProtKB: Q9KP49 regulon and binding site collection of Vibrio cholerae O1 biovar El Tor str. N16961


Sites are listed as curated.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002505.1 Q9KP49 monomer TGGTATAGCTTATGC -[789441:789455] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0734 , VC0733 , VC0735 , VC0736
    ... ... VC0734 VC0733 VC0735 VC0736
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGCATCCCACTTGC +[1509539:1509553] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1415 , VC1414
    ... ... VC1415 VC1414
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGAATGGATCTTGC -[1543753:1543767] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1446 , VC1445 , VC1444 , VC1447 , VC1448
    ... ... VC1446 VC1445 VC1444 VC1447 VC1448
    8 22723378
    NC_002505.1 Q9KP49 monomer CGGCACCCTTTTTGC +[1631839:1631853] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1519 , VC1518 , VC1517 , VC1520
    ... ... VC1519 VC1518 VC1517 VC1520
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGCATGACTCTTGC -[2291237:2291251] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2136 , VC2135 , VC2137
    ... ... VC2136 VC2135 VC2137
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGCACACTAATTGA -[2335939:2335953] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2189 , VC2188 , flgL (VC2190) , flgK (VC2191)
    ... ... VC2189 VC2188 flgL flgK
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGGAAGTTGC -[2336133:2336147] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2189 , flgL (VC2190) , flgK (VC2191)
    ... ... VC2189 flgL flgK
    8 22723378
    NC_002505.1 Q9KP49 monomer TGGTATGCTTAATGC +[2848880:2848894] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2681 , VC2680 , VC2682
    ... ... VC2681 VC2680 VC2682
    8 22723378
    NC_002506.1 Q9KP49 monomer TGGCATTGAGTTTGC +[137451:137465] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0123 , VCA0122 , VCA0121 , VCA0120 , VCA0119 , VCA0118 , VCA0117 , VCA0116 , VCA0115 , VCA0114 , VCA0113 , VCA0112 , VCA0111 , VCA0110 , VCA0109 , VCA0108 , VCA0107 , VCA0124
    ... ... VCA0123 VCA0122 VCA0121 VCA0120 VCA0119 VCA0118 VCA0117 VCA0116 VCA0115 VCA0114 VCA0113 VCA0112 VCA0111 VCA0110 VCA0109 VCA0108 VCA0107 VCA0124
    9 22723378
    NC_002506.1 Q9KP49 monomer TGGCATTCTTTATGC -[492039:492053] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0554 , VCA0553 , VCA0555
    ... ... VCA0554 VCA0553 VCA0555
    9 22723378
    NC_002506.1 Q9KP49 monomer TGGCATCAAATATGC +[820452:820466] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0868 , VCA0867 , VCA0869 , pbpG (VCA0870)
    ... ... VCA0868 VCA0867 VCA0869 pbpG
    9 22723378
    NC_002506.1 Q9KP49 monomer CGGCATGCTTTCTGC -[879793:879807] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0925 , VCA0924 , VCA0926
    ... ... VCA0925 VCA0924 VCA0926
    9 22723378
    NC_002506.1 Q9KP49 monomer TGGCACGTAATCTGC -[908318:908332] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0959 , VCA0958 , VCA0960
    ... ... VCA0959 VCA0958 VCA0960
    9 22723378
    NC_002505.1 Q9KP49 monomer CGGCTCTTTTTTTGC +[174026:174040] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0173 , VC0172 , VC0174
    ... ... VC0173 VC0172 VC0174
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATCGATCTTGA +[517095:517109] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0486 , VC0485 , VC0487
    ... ... VC0486 VC0485 VC0487
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGCCCCTTGG +[637143:637157] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0606 , VC0605 , VC0607
    ... ... VC0606 VC0605 VC0607
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGGCATTTGTTGGC +[712259:712273] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) lysS (VC0664) , prfB (VC0663) , VC0665
    ... ... lysS prfB VC0665
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCTAGATTTTTGC +[1078279:1078293] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1008 , VC1007 , VC1006 , VC1009
    ... ... VC1008 VC1007 VC1006 VC1009
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGATATGTGC -[1090070:1090084] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1020 , uvrB (VC1018) , VC1021 , VC1022 , VC1023
    ... ... VC1020 uvrB VC1021 VC1022 VC1023
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATATAATTTGC +[1131508:1131522] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1063 , VC1062 , VC1061 , VC1064
    ... ... VC1063 VC1062 VC1061 VC1064
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGTTTACTGC +[1212887:1212901] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) clpS (VC1143) , VC1142 , clpA (VC1144)
    ... ... clpS VC1142 clpA
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACTCTAATTGC -[1226396:1226410] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1154 , VC1155 , VC1156 , VC1157
    ... ... VC1154 VC1155 VC1156 VC1157
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCGCGAATCTTGC +[1246282:1246296] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1171 , trpD (VC1172) , VC1170 , trpA (VC1169) , VC1173 , VC1174 , VC1175 , VC1176
    ... ... VC1171 trpD VC1170 trpA VC1173 VC1174 VC1175 VC1176
    10 22723378
    NC_002505.1 Q9KP49 monomer TAGCACGTTTTATGC +[1344672:1344686] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1268 , VC1269
    ... ... VC1268 VC1269
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGTATAATAATTGC +[1322616:1322630] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1250 , VC1249 , VC1251
    ... ... VC1250 VC1249 VC1251
    10 22723378
    NC_002505.1 Q9KP49 monomer TAGCACGTTTTATGC +[1344672:1344686] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1268 , VC1269
    ... ... VC1268 VC1269
    10 22723378
    NC_002505.1 Q9KP49 monomer AGGTACGAAATTTGC +[1476876:1476890] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1384 , VC1383 , VC1382 , VC1381 , VC1380 , VC1379 , VC1385
    ... ... VC1384 VC1383 VC1382 VC1381 VC1380 VC1379 VC1385
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGAACGCTATTTGC -[1630513:1630527] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1516 , VC1515 , VC1517 , VC1518 , VC1519
    ... ... VC1516 VC1515 VC1517 VC1518 VC1519
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCGCAATTATTGC -[1631760:1631774] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1518 , VC1517 , VC1519 , VC1520
    ... ... VC1518 VC1517 VC1519 VC1520
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATCCCATTTGC +[1638344:1638358] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1523 , VC1524 , VC1525 , mobA (VC1526) , VC1527 , VC1522 , VC1521
    ... ... VC1523 VC1524 VC1525 mobA VC1527 VC1522 VC1521
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGATTTATCTTTGC -[1812547:1812561] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1678 , pspB (VC1677) , VC1676 , VC1679
    ... ... VC1678 pspB VC1676 VC1679
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATCGGTTTTGC +[1832278:1832292] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1699 , VC1698 , VC1697
    ... ... VC1699 VC1698 VC1697
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATTGGAATTGC -[2141190:2141204] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1989 , VC1988 , VC1987 , VC1986 , VC1990 , VC1991
    ... ... VC1989 VC1988 VC1987 VC1986 VC1990 VC1991
    10 22723378
    NC_002505.1 Q9KP49 monomer AGGCACAGCATTTGC +[2157740:2157754] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2005 , VC2004 , rrmA (VC2003)
    ... ... VC2005 VC2004 rrmA
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGAACAAATTTTGC -[2224587:2224601] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flhF (VC2068) , VC2067 , fliA (VC2066) , flhA (VC2069) , VC2065 , VC2070 , VC2071 , VC2072 , VC2073
    ... ... flhF VC2067 fliA flhA VC2065 VC2070 VC2071 VC2072 VC2073
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGACTGAAAATTGC -[2226619:2226633] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flhA (VC2069) , flhF (VC2068) , VC2067 , fliA (VC2066) , VC2065 , VC2070 , VC2071 , VC2072 , VC2073
    ... ... flhA flhF VC2067 fliA VC2065 VC2070 VC2071 VC2072 VC2073
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCTTACTTCTTGC -[2282770:2282784] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2128 , fliL (VC2127) , fliM (VC2126) , fliJ (VC2129) , fliI (VC2130) , fliH (VC2131)
    ... ... VC2128 fliL fliM fliJ fliI fliH
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATACAAATTGC -[2288688:2288702] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) fliE (VC2134) , fliF (VC2133) , fliG (VC2132) , VC2135 , VC2136
    ... ... fliE fliF fliG VC2135 VC2136
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACTAAAATTGC -[2296156:2296170] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) fliD (VC2140) , VC2139 , fliS (VC2138) , VC2141 , VC2142
    ... ... fliD VC2139 fliS VC2141 VC2142
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGTACGAAGTTTGC -[2323218:2323232] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2178 , VC2177 , VC2176 , VC2175 , prfA (VC2179) , hemA (VC2180)
    ... ... VC2178 VC2177 VC2176 VC2175 prfA hemA
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATACATATTGC -[2339340:2339354] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgK (VC2191) , flgL (VC2190) , flgJ (VC2192) , flgI (VC2193)
    ... ... flgK flgL flgJ flgI
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGATTTTTTA -[2341601:2341615] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgI (VC2193) , flgJ (VC2192) , flgH (VC2194) , flgG (VC2195) , flgF (VC2196)
    ... ... flgI flgJ flgH flgG flgF
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCATGCTGCTTGC -[2343980:2343994] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgF (VC2196) , flgG (VC2195) , flgH (VC2194) , flgE (VC2197) , flgD (VC2198) , flgC (VC2199) , flgB (VC2200)
    ... ... flgF flgG flgH flgE flgD flgC flgB
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGTACGCTAATTGC -[2347047:2347061] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgB (VC2200) , flgC (VC2199) , flgD (VC2198) , flgE (VC2197) , VC2201 , VC2202
    ... ... flgB flgC flgD flgE VC2201 VC2202
    10 22723378
    NC_002505.1 Q9KP49 monomer GGGTATAAATTTTGC -[2352113:2352127] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2207 , VC2206 , VC2208
    ... ... VC2207 VC2206 VC2208
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGAACGCTCCTTGC +[2352039:2352053] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2208 , VC2207 , VC2206
    ... ... VC2208 VC2207 VC2206
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGATCGCATAATTC -[2443519:2443533] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2288 , VC2287 , VC2289 , VC2290 , VC2291 , VC2292 , VC2293 , VC2294 , VC2295
    ... ... VC2288 VC2287 VC2289 VC2290 VC2291 VC2292 VC2293 VC2294 VC2295
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGCACAGCCTTTGC -[2565183:2565197] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2397 , lpxC (VC2396) , ftsA (VC2398) , VC2399
    ... ... VC2397 lpxC ftsA VC2399
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGTTGAAAGAAACG +[2634404:2634418] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) rumA (VC2452) , VC2451 , VC2453 , VC2454 , VC2455 , VC2456
    ... ... rumA VC2451 VC2453 VC2454 VC2455 VC2456
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGTGATATGC -[2684862:2684876] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2499 , VC2498 , VC2500
    ... ... VC2499 VC2498 VC2500
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGCTGCTTGA -[2795432:2795446] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2624 , VC2623 , VC2625
    ... ... VC2624 VC2623 VC2625
    10 22723378
    NC_002505.1 Q9KP49 monomer TGGCACGCTTTTCGC +[2918961:2918975] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) glnA (VC2746) , VC2745 , VC2744
    ... ... glnA VC2745 VC2744
    10 22723378
    NC_002505.1 Q9KP49 monomer CGGCAAGATTATTGC +[2921196:2921210] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) glnL (VC2748) , VC2747 , glnA (VC2746) , VC2749 , VC2750
    ... ... glnL VC2747 glnA VC2749 VC2750
    10 22723378
    NC_002506.1 Q9KP49 monomer TGGCATCCCACTTGC +[19688:19702] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0017 , VCA0016 , VCA0015
    ... ... VCA0017 VCA0016 VCA0015
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCACGCTTCGTGC +[48421:48435] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0040 , VCA0041
    ... ... VCA0040 VCA0041
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCACAATTTATGC -[59869:59883] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0051 , VCA0050 , VCA0049 , VCA0052 , VCA0053
    ... ... VCA0051 VCA0050 VCA0049 VCA0052 VCA0053
    11 22723378
    NC_002506.1 Q9KP49 monomer CGGCATTGAAAATGC -[109550:109564] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0101 , VCA0100 , VCA0099 , VCA0098 , VCA0102
    ... ... VCA0101 VCA0100 VCA0099 VCA0098 VCA0102
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGAACATTAATTGC +[115092:115106] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0105 , VCA0106 , VCA0104 , VCA0103
    ... ... VCA0105 VCA0106 VCA0104 VCA0103
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCATCTTCTTTGC +[159101:159115] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0144 , VCA0143 , VCA0145
    ... ... VCA0144 VCA0143 VCA0145
    11 22723378
    NC_002506.1 Q9KP49 monomer CGGCGCATTTATTGC -[212745:212759] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0195 , VCA0196 , VCA0197
    ... ... VCA0195 VCA0196 VCA0197
    11 22723378
    NC_002506.1 Q9KP49 monomer TGTACAGAAATGAGC +[304626:304640] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0283 , VCA0284 , VCA0285 , VCA0286
    ... ... VCA0283 VCA0284 VCA0285 VCA0286
    11 22723378
    NC_002506.1 Q9KP49 monomer AGGCACAATATTTGC +[458949:458963] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0524 , VCA0523 , VCA0525
    ... ... VCA0524 VCA0523 VCA0525
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCATATAGCTTGC +[483803:483817] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0545 , VCA0546
    ... ... VCA0545 VCA0546
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCCTGTAATTTGC +[678984:678998] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0734 , VCA0733 , VCA0732
    ... ... VCA0734 VCA0733 VCA0732
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCACAGATAGTGC +[772230:772244] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0826 , phhB (VCA0827) , phhA (VCA0828)
    ... ... VCA0826 phhB phhA
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCACTTTATTTGC -[919495:919509] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0972 , VCA0971 , VCA0973 , VCA0974
    ... ... VCA0972 VCA0971 VCA0973 VCA0974
    11 22723378
    NC_002506.1 Q9KP49 monomer TGGCACGCACTATGC -[965825:965839] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA1016 , VCA1017 , VCA1018
    ... ... VCA1016 VCA1017 VCA1018
    11 22723378
    NC_002506.1 Q9KP49 monomer CGGAATAAAATTTGC +[1028176:1028190] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA1074 , VCA1075 , VCA1076
    ... ... VCA1074 VCA1075 VCA1076
    11 22723378

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGGTATAGCTTATGC
    TGGCATCCCACTTGC
    TGGAATGGATCTTGC
    CGGCACCCTTTTTGC
    TGGCATGACTCTTGC
    TGGCACACTAATTGA
    TGGCACGGAAGTTGC
    TGGTATGCTTAATGC
    TGGCATTGAGTTTGC
    TGGCATTCTTTATGC
    TGGCATCAAATATGC
    CGGCATGCTTTCTGC
    TGGCACGTAATCTGC
    CGGCTCTTTTTTTGC
    TGGCATCGATCTTGA
    TGGCACGCCCCTTGG
    TGGGCATTTGTTGGC
    TGGCTAGATTTTTGC
    TGGCACGATATGTGC
    TGGCATATAATTTGC
    TGGCACGTTTACTGC
    TGGCACTCTAATTGC
    TGGCGCGAATCTTGC
    TAGCACGTTTTATGC
    CGGTATAATAATTGC
    TAGCACGTTTTATGC
    AGGTACGAAATTTGC
    TGGAACGCTATTTGC
    TGGCGCAATTATTGC
    TGGCATCCCATTTGC
    TGGATTTATCTTTGC
    TGGCATCGGTTTTGC
    TGGCATTGGAATTGC
    AGGCACAGCATTTGC
    TGGAACAAATTTTGC
    TGGACTGAAAATTGC
    TGGCTTACTTCTTGC
    TGGCATACAAATTGC
    TGGCACTAAAATTGC
    CGGTACGAAGTTTGC
    TGGCATACATATTGC
    TGGCACGATTTTTTA
    TGGCATGCTGCTTGC
    TGGTACGCTAATTGC
    GGGTATAAATTTTGC
    TGGAACGCTCCTTGC
    CGGATCGCATAATTC
    CGGCACAGCCTTTGC
    CGGTTGAAAGAAACG
    TGGCACGTGATATGC
    TGGCACGCTGCTTGA
    TGGCACGCTTTTCGC
    CGGCAAGATTATTGC
    TGGCATCCCACTTGC
    TGGCACGCTTCGTGC
    TGGCACAATTTATGC
    CGGCATTGAAAATGC
    TGGAACATTAATTGC
    TGGCATCTTCTTTGC
    CGGCGCATTTATTGC
    TGTACAGAAATGAGC
    AGGCACAATATTTGC
    TGGCATATAGCTTGC
    TGGCCTGTAATTTGC
    TGGCACAGATAGTGC
    TGGCACTTTATTTGC
    TGGCACGCACTATGC
    CGGAATAAAATTTGC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGGTATAGCTTATGC
    TGGCATCCCACTTGC
    TGGAATGGATCTTGC
    CGGCACCCTTTTTGC
    TGGCATGACTCTTGC
    TGGCACACTAATTGA
    TGGCACGGAAGTTGC
    TGGTATGCTTAATGC
    TGGCATTGAGTTTGC
    TGGCATTCTTTATGC
    TGGCATCAAATATGC
    CGGCATGCTTTCTGC
    TGGCACGTAATCTGC
    CGGCTCTTTTTTTGC
    TGGCATCGATCTTGA
    TGGCACGCCCCTTGG
    TGGGCATTTGTTGGC
    TGGCTAGATTTTTGC
    TGGCACGATATGTGC
    TGGCATATAATTTGC
    TGGCACGTTTACTGC
    TGGCACTCTAATTGC
    TGGCGCGAATCTTGC
    TAGCACGTTTTATGC
    CGGTATAATAATTGC
    TAGCACGTTTTATGC
    AGGTACGAAATTTGC
    TGGAACGCTATTTGC
    TGGCGCAATTATTGC
    TGGCATCCCATTTGC
    TGGATTTATCTTTGC
    TGGCATCGGTTTTGC
    TGGCATTGGAATTGC
    AGGCACAGCATTTGC
    TGGAACAAATTTTGC
    TGGACTGAAAATTGC
    TGGCTTACTTCTTGC
    TGGCATACAAATTGC
    TGGCACTAAAATTGC
    CGGTACGAAGTTTGC
    TGGCATACATATTGC
    TGGCACGATTTTTTA
    TGGCATGCTGCTTGC
    TGGTACGCTAATTGC
    GGGTATAAATTTTGC
    TGGAACGCTCCTTGC
    CGGATCGCATAATTC
    CGGCACAGCCTTTGC
    CGGTTGAAAGAAACG
    TGGCACGTGATATGC
    TGGCACGCTGCTTGA
    TGGCACGCTTTTCGC
    CGGCAAGATTATTGC
    TGGCATCCCACTTGC
    TGGCACGCTTCGTGC
    TGGCACAATTTATGC
    CGGCATTGAAAATGC
    TGGAACATTAATTGC
    TGGCATCTTCTTTGC
    CGGCGCATTTATTGC
    TGTACAGAAATGAGC
    AGGCACAATATTTGC
    TGGCATATAGCTTGC
    TGGCCTGTAATTTGC
    TGGCACAGATAGTGC
    TGGCACTTTATTTGC
    TGGCACGCACTATGC
    CGGAATAAAATTTGC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.