RpoN - UniProtKB: Q9KP49 regulon and binding site collection of Vibrio cholerae O1 biovar El Tor str. N16961


Sites are listed as curated.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
TGGTATAGCTTATGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0734 , VC0733 , VC0735 , VC0736
... ... VC0734 VC0733 VC0735 VC0736
8 22723378
TGGCATCCCACTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1415 , VC1414
... ... VC1415 VC1414
8 22723378
TGGAATGGATCTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1446 , VC1445 , VC1444 , VC1447 , VC1448
... ... VC1446 VC1445 VC1444 VC1447 VC1448
8 22723378
CGGCACCCTTTTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1519 , VC1518 , VC1517 , VC1520
... ... VC1519 VC1518 VC1517 VC1520
8 22723378
TGGCATGACTCTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2136 , VC2135 , VC2137
... ... VC2136 VC2135 VC2137
8 22723378
TGGCACACTAATTGA Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2189 , VC2188 , flgL (VC2190) , flgK (VC2191)
... ... VC2189 VC2188 flgL flgK
8 22723378
TGGCACGGAAGTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2189 , flgL (VC2190) , flgK (VC2191)
... ... VC2189 flgL flgK
8 22723378
TGGTATGCTTAATGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2681 , VC2680 , VC2682
... ... VC2681 VC2680 VC2682
8 22723378
TGGCATTGAGTTTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0123 , VCA0122 , VCA0121 , VCA0120 , VCA0119 , VCA0118 , VCA0117 , VCA0116 , VCA0115 , VCA0114 , VCA0113 , VCA0112 , VCA0111 , VCA0110 , VCA0109 , VCA0108 , VCA0107 , VCA0124
... ... VCA0123 VCA0122 VCA0121 VCA0120 VCA0119 VCA0118 VCA0117 VCA0116 VCA0115 VCA0114 VCA0113 VCA0112 VCA0111 VCA0110 VCA0109 VCA0108 VCA0107 VCA0124
9 22723378
TGGCATTCTTTATGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0554 , VCA0553 , VCA0555
... ... VCA0554 VCA0553 VCA0555
9 22723378
TGGCATCAAATATGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0868 , VCA0867 , VCA0869 , pbpG (VCA0870)
... ... VCA0868 VCA0867 VCA0869 pbpG
9 22723378
CGGCATGCTTTCTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0925 , VCA0924 , VCA0926
... ... VCA0925 VCA0924 VCA0926
9 22723378
TGGCACGTAATCTGC Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0959 , VCA0958 , VCA0960
... ... VCA0959 VCA0958 VCA0960
9 22723378
CGGCTCTTTTTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0173 , VC0172 , VC0174
... ... VC0173 VC0172 VC0174
10 22723378
TGGCATCGATCTTGA Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0486 , VC0485 , VC0487
... ... VC0486 VC0485 VC0487
10 22723378
TGGCACGCCCCTTGG Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC0606 , VC0605 , VC0607
... ... VC0606 VC0605 VC0607
10 22723378
TGGGCATTTGTTGGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) lysS (VC0664) , prfB (VC0663) , VC0665
... ... lysS prfB VC0665
10 22723378
TGGCTAGATTTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1008 , VC1007 , VC1006 , VC1009
... ... VC1008 VC1007 VC1006 VC1009
10 22723378
TGGCACGATATGTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1020 , uvrB (VC1018) , VC1021 , VC1022 , VC1023
... ... VC1020 uvrB VC1021 VC1022 VC1023
10 22723378
TGGCATATAATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1063 , VC1062 , VC1061 , VC1064
... ... VC1063 VC1062 VC1061 VC1064
10 22723378
TGGCACGTTTACTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) clpS (VC1143) , VC1142 , clpA (VC1144)
... ... clpS VC1142 clpA
10 22723378
TGGCACTCTAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1154 , VC1155 , VC1156 , VC1157
... ... VC1154 VC1155 VC1156 VC1157
10 22723378
TGGCGCGAATCTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1171 , trpD (VC1172) , VC1170 , trpA (VC1169) , VC1173 , VC1174 , VC1175 , VC1176
... ... VC1171 trpD VC1170 trpA VC1173 VC1174 VC1175 VC1176
10 22723378
TAGCACGTTTTATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1268 , VC1269
... ... VC1268 VC1269
10 22723378
CGGTATAATAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1250 , VC1249 , VC1251
... ... VC1250 VC1249 VC1251
10 22723378
TAGCACGTTTTATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1268 , VC1269
... ... VC1268 VC1269
10 22723378
AGGTACGAAATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1384 , VC1383 , VC1382 , VC1381 , VC1380 , VC1379 , VC1385
... ... VC1384 VC1383 VC1382 VC1381 VC1380 VC1379 VC1385
10 22723378
TGGAACGCTATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1516 , VC1515 , VC1517 , VC1518 , VC1519
... ... VC1516 VC1515 VC1517 VC1518 VC1519
10 22723378
TGGCGCAATTATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1518 , VC1517 , VC1519 , VC1520
... ... VC1518 VC1517 VC1519 VC1520
10 22723378
TGGCATCCCATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1523 , VC1524 , VC1525 , mobA (VC1526) , VC1527 , VC1522 , VC1521
... ... VC1523 VC1524 VC1525 mobA VC1527 VC1522 VC1521
10 22723378
TGGATTTATCTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1678 , pspB (VC1677) , VC1676 , VC1679
... ... VC1678 pspB VC1676 VC1679
10 22723378
TGGCATCGGTTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1699 , VC1698 , VC1697
... ... VC1699 VC1698 VC1697
10 22723378
TGGCATTGGAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC1989 , VC1988 , VC1987 , VC1986 , VC1990 , VC1991
... ... VC1989 VC1988 VC1987 VC1986 VC1990 VC1991
10 22723378
AGGCACAGCATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2005 , VC2004 , rrmA (VC2003)
... ... VC2005 VC2004 rrmA
10 22723378
TGGAACAAATTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flhF (VC2068) , VC2067 , fliA (VC2066) , flhA (VC2069) , VC2065 , VC2070 , VC2071 , VC2072 , VC2073
... ... flhF VC2067 fliA flhA VC2065 VC2070 VC2071 VC2072 VC2073
10 22723378
TGGACTGAAAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flhA (VC2069) , flhF (VC2068) , VC2067 , fliA (VC2066) , VC2065 , VC2070 , VC2071 , VC2072 , VC2073
... ... flhA flhF VC2067 fliA VC2065 VC2070 VC2071 VC2072 VC2073
10 22723378
TGGCTTACTTCTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2128 , fliL (VC2127) , fliM (VC2126) , fliJ (VC2129) , fliI (VC2130) , fliH (VC2131)
... ... VC2128 fliL fliM fliJ fliI fliH
10 22723378
TGGCATACAAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) fliE (VC2134) , fliF (VC2133) , fliG (VC2132) , VC2135 , VC2136
... ... fliE fliF fliG VC2135 VC2136
10 22723378
TGGCACTAAAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) fliD (VC2140) , VC2139 , fliS (VC2138) , VC2141 , VC2142
... ... fliD VC2139 fliS VC2141 VC2142
10 22723378
CGGTACGAAGTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2178 , VC2177 , VC2176 , VC2175 , prfA (VC2179) , hemA (VC2180)
... ... VC2178 VC2177 VC2176 VC2175 prfA hemA
10 22723378
TGGCATACATATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgK (VC2191) , flgL (VC2190) , flgJ (VC2192) , flgI (VC2193)
... ... flgK flgL flgJ flgI
10 22723378
TGGCACGATTTTTTA Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgI (VC2193) , flgJ (VC2192) , flgH (VC2194) , flgG (VC2195) , flgF (VC2196)
... ... flgI flgJ flgH flgG flgF
10 22723378
TGGCATGCTGCTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgF (VC2196) , flgG (VC2195) , flgH (VC2194) , flgE (VC2197) , flgD (VC2198) , flgC (VC2199) , flgB (VC2200)
... ... flgF flgG flgH flgE flgD flgC flgB
10 22723378
TGGTACGCTAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) flgB (VC2200) , flgC (VC2199) , flgD (VC2198) , flgE (VC2197) , VC2201 , VC2202
... ... flgB flgC flgD flgE VC2201 VC2202
10 22723378
GGGTATAAATTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2207 , VC2206 , VC2208
... ... VC2207 VC2206 VC2208
10 22723378
TGGAACGCTCCTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2208 , VC2207 , VC2206
... ... VC2208 VC2207 VC2206
10 22723378
CGGATCGCATAATTC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2288 , VC2287 , VC2289 , VC2290 , VC2291 , VC2292 , VC2293 , VC2294 , VC2295
... ... VC2288 VC2287 VC2289 VC2290 VC2291 VC2292 VC2293 VC2294 VC2295
10 22723378
CGGCACAGCCTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2397 , lpxC (VC2396) , ftsA (VC2398) , VC2399
... ... VC2397 lpxC ftsA VC2399
10 22723378
CGGTTGAAAGAAACG Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) rumA (VC2452) , VC2451 , VC2453 , VC2454 , VC2455 , VC2456
... ... rumA VC2451 VC2453 VC2454 VC2455 VC2456
10 22723378
TGGCACGTGATATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2499 , VC2498 , VC2500
... ... VC2499 VC2498 VC2500
10 22723378
TGGCACGCTGCTTGA Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VC2624 , VC2623 , VC2625
... ... VC2624 VC2623 VC2625
10 22723378
TGGCACGCTTTTCGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) glnA (VC2746) , VC2745 , VC2744
... ... glnA VC2745 VC2744
10 22723378
CGGCAAGATTATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) glnL (VC2748) , VC2747 , glnA (VC2746) , VC2749 , VC2750
... ... glnL VC2747 glnA VC2749 VC2750
10 22723378
TGGCATCCCACTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0017 , VCA0016 , VCA0015
... ... VCA0017 VCA0016 VCA0015
11 22723378
TGGCACGCTTCGTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0040 , VCA0041
... ... VCA0040 VCA0041
11 22723378
TGGCACAATTTATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0051 , VCA0050 , VCA0049 , VCA0052 , VCA0053
... ... VCA0051 VCA0050 VCA0049 VCA0052 VCA0053
11 22723378
CGGCATTGAAAATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0101 , VCA0100 , VCA0099 , VCA0098 , VCA0102
... ... VCA0101 VCA0100 VCA0099 VCA0098 VCA0102
11 22723378
TGGAACATTAATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0105 , VCA0106 , VCA0104 , VCA0103
... ... VCA0105 VCA0106 VCA0104 VCA0103
11 22723378
TGGCATCTTCTTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0144 , VCA0143 , VCA0145
... ... VCA0144 VCA0143 VCA0145
11 22723378
CGGCGCATTTATTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0195 , VCA0196 , VCA0197
... ... VCA0195 VCA0196 VCA0197
11 22723378
TGTACAGAAATGAGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0283 , VCA0284 , VCA0285 , VCA0286
... ... VCA0283 VCA0284 VCA0285 VCA0286
11 22723378
AGGCACAATATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0524 , VCA0523 , VCA0525
... ... VCA0524 VCA0523 VCA0525
11 22723378
TGGCATATAGCTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0545 , VCA0546
... ... VCA0545 VCA0546
11 22723378
TGGCCTGTAATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0734 , VCA0733 , VCA0732
... ... VCA0734 VCA0733 VCA0732
11 22723378
TGGCACAGATAGTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0826 , phhB (VCA0827) , phhA (VCA0828)
... ... VCA0826 phhB phhA
11 22723378
TGGCACTTTATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA0972 , VCA0971 , VCA0973 , VCA0974
... ... VCA0972 VCA0971 VCA0973 VCA0974
11 22723378
TGGCACGCACTATGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA1016 , VCA1017 , VCA1018
... ... VCA1016 VCA1017 VCA1018
11 22723378
CGGAATAAAATTTGC Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) VCA1074 , VCA1075 , VCA1076
... ... VCA1074 VCA1075 VCA1076
11 22723378

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGGTATAGCTTATGC
TGGCATCCCACTTGC
TGGAATGGATCTTGC
CGGCACCCTTTTTGC
TGGCATGACTCTTGC
TGGCACACTAATTGA
TGGCACGGAAGTTGC
TGGTATGCTTAATGC
TGGCATTGAGTTTGC
TGGCATTCTTTATGC
TGGCATCAAATATGC
CGGCATGCTTTCTGC
TGGCACGTAATCTGC
CGGCTCTTTTTTTGC
TGGCATCGATCTTGA
TGGCACGCCCCTTGG
TGGGCATTTGTTGGC
TGGCTAGATTTTTGC
TGGCACGATATGTGC
TGGCATATAATTTGC
TGGCACGTTTACTGC
TGGCACTCTAATTGC
TGGCGCGAATCTTGC
TAGCACGTTTTATGC
CGGTATAATAATTGC
TAGCACGTTTTATGC
AGGTACGAAATTTGC
TGGAACGCTATTTGC
TGGCGCAATTATTGC
TGGCATCCCATTTGC
TGGATTTATCTTTGC
TGGCATCGGTTTTGC
TGGCATTGGAATTGC
AGGCACAGCATTTGC
TGGAACAAATTTTGC
TGGACTGAAAATTGC
TGGCTTACTTCTTGC
TGGCATACAAATTGC
TGGCACTAAAATTGC
CGGTACGAAGTTTGC
TGGCATACATATTGC
TGGCACGATTTTTTA
TGGCATGCTGCTTGC
TGGTACGCTAATTGC
GGGTATAAATTTTGC
TGGAACGCTCCTTGC
CGGATCGCATAATTC
CGGCACAGCCTTTGC
CGGTTGAAAGAAACG
TGGCACGTGATATGC
TGGCACGCTGCTTGA
TGGCACGCTTTTCGC
CGGCAAGATTATTGC
TGGCATCCCACTTGC
TGGCACGCTTCGTGC
TGGCACAATTTATGC
CGGCATTGAAAATGC
TGGAACATTAATTGC
TGGCATCTTCTTTGC
CGGCGCATTTATTGC
TGTACAGAAATGAGC
AGGCACAATATTTGC
TGGCATATAGCTTGC
TGGCCTGTAATTTGC
TGGCACAGATAGTGC
TGGCACTTTATTTGC
TGGCACGCACTATGC
CGGAATAAAATTTGC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.